Contig 011318:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021I02Sequence685011318 (2)gb|KDP25214.1|1e-55hypothetical protein JCGZ_20370 [Jatropha curcas]742011318 (2)gb|KDP25214.1|9e-53hypothetical protein JCGZ_20370 [Jatropha curcas]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-                               GGACGCCGCAAGAGGGGCTGATGACCACCACGACGATGAT
                      ____________________________________________________________
consensus                                 GGACGCCGCAAGAGGGGCTGATGACCACCACGACGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           CAGACCCCAAGAACCAGAACCCATCTCCATTTCTGCTCATCATCGTCCCACCTGGAAACT
                      ____________________________________________________________
consensus             CAGACCCCAAGAACCAGAACCCATCTCCATTTCTGCTCATCATCGTCCCACCTGGAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           GTACGAGAATCCCTTTTATACCAATCCCCACAACCTCAACAACAACAACAATAATCATAG
                      ____________________________________________________________
consensus             GTACGAGAATCCCTTTTATACCAATCCCCACAACCTCAACAACAACAACAATAATCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           TGCCCCTGTCATCAAACGCCACGAAAACAACCAAGTTCTTCACCGCCTGCATCTCCCCGT
                      ____________________________________________________________
consensus             TGCCCCTGTCATCAAACGCCACGAAAACAACCAAGTTCTTCACCGCCTGCATCTCCCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           CTCCGCGCGCAAAATCGCCGCATCTTTCTGGGATTTAACGTTCGTGAAGTCTTCCTACAT
                      ____________________________________________________________
consensus             CTCCGCGCGCAAAATCGCCGCATCTTTCTGGGATTTAACGTTCGTGAAGTCTTCCTACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           GGTATCGGAGCTGGAGGCGGCGCGTGCCCAGATCCTGGAGCTGAAGGCCGAGCTGGAATT
rJMSF021I02+                                                       GGCCGAGCTGGAATT
                      ____________________________________________________________
consensus             GGTATCGGAGCTGGAGGCGGCGCGTGCCCAGATCCTGGAGCTGAAGGCCGAGCTGGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           CGAGCGCAAGAGCCGCAAGAAAGTGGAGTCCATGAACAAGAAGCTGGCCCGGGAGCTCTC
rJMSF021I02+          CGAGCGCAAGAGCCGCAAGAAAGTGGAGTCCATGAACAAGAAGCTGGCCCGGGAGCTCTC
                      ____________________________________________________________
consensus             CGAGCGCAAGAGCCGCAAGAAAGTGGAGTCCATGAACAAGAAGCTGGCCCGGGAGCTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           CGAGGAGAGGAAACACAAGGACGCAATGCGGAAAATGTTCGACCGCCTCGCCGCCGAGGC
rJMSF021I02+          CGAGGAGAGGAAACACAAGGACGCAATGCGGAAAATGTTCGACCGCCTCGCCGCCGAGGC
                      ____________________________________________________________
consensus             CGAGGAGAGGAAACACAAGGACGCAATGCGGAAAATGTTCGACCGCCTCGCCGCCGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           CTCGTCGGAAAAAGCCCAGATCAAGCGGGTGAAGAAGGAGATGGAGGAAGAGCGGAAGAT
rJMSF021I02+          CTCGTCGGAAAAAGCCCAGATCAAGCGGGTGAAGAAGGAGATGGAGGAAGAGCGGAAGAT
                      ____________________________________________________________
consensus             CTCGTCGGAAAAAGCCCAGATCAAGCGGGTGAAGAAGGAGATGGAGGAAGAGCGGAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           GCTTCGCGTGGCGGAGGTTTTAAGGGAAGAAAGAGTTCAAATGAAGCTCTCCGAGGCCAA
rJMSF021I02+          GCTTCGCGTGGCGGAGGTTTTAAGGGAAGAAAGAGTTCAAATGAAGCTCTCCGAGGCCAA
                      ____________________________________________________________
consensus             GCTTCGCGTGGCGGAGGTTTTAAGGGAAGAAAGAGTTCAAATGAAGCTCTCCGAGGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           GTTTTTGTTCGAGGAAAAAATGATGGAACTGGAGAAATCAACCGAGAATCTCCACCTCGA
rJMSF021I02+          GTTTTTGTTCGAGGAAAAAATGATGGAACTGGAGAAATCAACCGAGAATCTCCACCTCGA
                      ____________________________________________________________
consensus             GTTTTTGTTCGAGGAAAAAATGATGGAACTGGAGAAATCAACCGAGAATCTCCACCTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021I02-           AAAACCAAANTCTCCAGACAACGTTATTCCGACAACCACTGTTTC               
rJMSF021I02+          AAAACCAAAATCTCCAGACAACGTTATTCCGACAACCACTGTTTCTTGTTCTTCTAACCA
                      ____________________________________________________________
consensus             AAAACCAAAATCTCCAGACAACGTTATTCCGACAACCACTGTTTCTTGTTCTTCTAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          AAGCAGAGCAGTGGCGACCAATAATCCAAGAAAAGCTTCTCCGGAGGCAGAAAACCCACA
                      ____________________________________________________________
consensus             AAGCAGAGCAGTGGCGACCAATAATCCAAGAAAAGCTTCTCCGGAGGCAGAAAACCCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          CATCAAAAGAGGGATCAAAGGATTCGTGGAGTTTCCGAAAGTGGTTAAAGCAATCGGATC
                      ____________________________________________________________
consensus             CATCAAAAGAGGGATCAAAGGATTCGTGGAGTTTCCGAAAGTGGTTAAAGCAATCGGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          AAAAAGCAGGCAGTTGAGCACAAAGTTGGAGTGTCAGAAAGCACAGTTAAGGTTGCTTCT
                      ____________________________________________________________
consensus             AAAAAGCAGGCAGTTGAGCACAAAGTTGGAGTGTCAGAAAGCACAGTTAAGGTTGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          CAAACAGAAGAATCCTGTTCGATCCAACATTGGCCTTCTCACAAGCTAATTAATTATAAG
                      ____________________________________________________________
consensus             CAAACAGAAGAATCCTGTTCGATCCAACATTGGCCTTCTCACAAGCTAATTAATTATAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          TTTGCAGGTTTTAGTTTTTGCACTTTTTGATCGGTTGATGTTTTGCTGTTTGAATGAAGT
                      ____________________________________________________________
consensus             TTTGCAGGTTTTAGTTTTTGCACTTTTTGATCGGTTGATGTTTTGCTGTTTGAATGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF021I02+          TTTACAGTGTTTTCTTAGGGAATCATCATACCAGTGTTTGCCTTAGTATACATATTTTTT
                      ____________________________________________________________
consensus             TTTACAGTGTTTTCTTAGGGAATCATCATACCAGTGTTTGCCTTAGTATACATATTTTTT