Contig 011317:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006F03Sequence389000577 (2)ref|XP_009774999.1|2e-37PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Nicotiana sylvest129011317 (2)ref|XP_011080035.1|1e-04PREDICTED: geranylgeranyl transferase type-2 subunit alpha [Sesamum indicum] re
JMSF021G15Sequence666003661 (3)ref|XP_009779401.1|5e-29PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian723011317 (2)ref|XP_004238006.1|5e-62PREDICTED: geranylgeranyl transferase type-2 subunit alpha [Solanum lycopersicu

Alignment

This contig is upended


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rJMSF021G15+                                                                   CAG
                      ____________________________________________________________
consensus                                                                      CAG
 
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rJMSF021G15+          TTTTACAATGATTTAATGGAATTGGATCCACCACACATTCAGTACTATAAGGATGAATAC
                      ____________________________________________________________
consensus             TTTTACAATGATTTAATGGAATTGGATCCACCACACATTCAGTACTATAAGGATGAATAC
 
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rJMSF021G15+          AGCTCTGTCTTACTAAGACAGTTATTCTCCAATCAAGAGTCTTTGCTGGAACGCTGCCAT
                      ____________________________________________________________
consensus             AGCTCTGTCTTACTAAGACAGTTATTCTCCAATCAAGAGTCTTTGCTGGAACGCTGCCAT
 
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rJMSF021G15+          CAATATCGAGAACCATCTTCTTCAATCATTTATAATTATTCATGTCTGCGGCTAAATAAC
                      ____________________________________________________________
consensus             CAATATCGAGAACCATCTTCTTCAATCATTTATAATTATTCATGTCTGCGGCTAAATAAC
 
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rJMSF021G15+          CTCTCACTTTCTCGAGTTGGGTGTGTCGAAAAACTTTTGTGGGTCCAGATCCTAGATCTT
                      ____________________________________________________________
consensus             CTCTCACTTTCTCGAGTTGGGTGTGTCGAAAAACTTTTGTGGGTCCAGATCCTAGATCTT
 
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rJMSF021G15+          AGCTGCAACCAACTTCGGTCAATTGAAGGCATGGAGGCAATGCAGCTACTCTCTTGTTTA
                      ____________________________________________________________
consensus             AGCTGCAACCAACTTCGGTCAATTGAAGGCATGGAGGCAATGCAGCTACTCTCTTGTTTA
 
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rJMSF021G15+          AACCTAAGCAAGAACTTACTTTGCAGTTTCACTGCTTTGGAGCCTTTAAGGCAGCTAAGA
                      ____________________________________________________________
consensus             AACCTAAGCAAGAACTTACTTTGCAGTTTCACTGCTTTGGAGCCTTTAAGGCAGCTAAGA
 
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rJMSF006F03+                                                      CTCAATTGACACAAGA
rJMSF021G15+          TTGCTAAAAGTATTGGACATCTCATCCAATGAGATCGGTGCGCACTCAATTGACACAAGA
                      ____________________________________________________________
consensus             TTGCTAAAAGTATTGGACATCTCATCCAATGAGATCGGTGCGCACTCAATTGACACAAGA
 
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rJMSF006F03+          AGGTACCTGTGTTCNTNTCCANTGCGCCACAGTAATGGAAGTGCTTGGAACATCGAGCAN
rJMSF021G15+          AGGTACCTGTGTTCTTCTCCGCTGTGCCACAGTAATGGAAGTGCTTGGAACATCGAGCAA
                      ____________________________________________________________
consensus             AGGTACCTGTGTTCTTCTCCGCTGTGCCACAGTAATGGAAGTGCTTGGAACATCGAGCAA
 
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rJMSF006F03+          TTTTCAACNNATGCTGTCAATGCAANTGATTCCTGGGANGCATT                
rJMSF021G15+          TTTTCAACCGATGCTGTCAATGCAACTGATTACTGGGAAGCATTCTTAGTCTTTAAAAAT
                      ____________________________________________________________
consensus             TTTTCAACCGATGCTGTCAATGCAACTGATTCCTGGGAAGCATTCTTAGTCTTTAAAAAT
 
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rJMSF021G15+          CTGAATTTGATACAACTAGATATTGCGGGAAATGCTGTTTCTGATGAAAAGTTAAAGTTG
                      ____________________________________________________________
consensus             CTGAATTTGATACAACTAGATATTGCGGGAAATGCTGTTTCTGATGAAAAGTTAAAGTTG
 
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rJMSF021G15+          TTGCTGTCTGAGCTAATGCCATCGCTCAAATGGCTTGATGGTCAAAAGCTCCGATAAGTT
                      ____________________________________________________________
consensus             TTGCTGTCTGAGCTAATGCCATCGCTCAAATGGCTTGATGGTCAAAAGCTCCGATAAGTT
 
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rJMSF021G15+          TAAAGTGCCCTTCTTATTTTCTCGTGTACTTTTATGTAACCAGTGACTACAGATGAACCT
                      ____________________________________________________________
consensus             TAAAGTGCCCTTCTTATTTTCTCGTGTACTTTTATGTAACCAGTGACTACAGATGAACCT