Contig 011316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021G05Sequence562011316 (2)ref|XP_011095061.1|1e-12PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]573011316 (2)ref|XP_009783709.1|2e-04PREDICTED: fibroin heavy chain isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF021G05+                                                 TTTTTTTTTTAATATGGAAGAT
rJMSF021G05-                                     AATCGAAGCATTTTTTTTTTTTNTATGGAAGAT
                      ____________________________________________________________
consensus                                        AATCGAAGCATTTTTTTTTTTTATATGGAAGAT
 
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JMSF021G05+           CTACGACATAGCTAGAAAATTACAAGGAATCTAGAATGGTAGATTTCTATGTTTAGGATT
rJMSF021G05-          CTACGACNTAGCTAGAAAATTACANGGAATCTAGAAGGGTANATTTCTATGTTTAGGATT
                      ____________________________________________________________
consensus             CTACGACATAGCTAGAAAATTACAAGGAATCTAGAATGGTAGATTTCTATGTTTAGGATT
 
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JMSF021G05+           CTGCTACTACCGTCCCCTCCTCCATTTGTCCACCTCGCGAGAAGTTGCCCTGATTAGCTT
rJMSF021G05-          CNGCTACTACCGTCCCCTCCTCCATTTGTCCACCTCGCGAGAAGTTGCCCNGATTAGCTT
                      ____________________________________________________________
consensus             CTGCTACTACCGTCCCCTCCTCCATTTGTCCACCTCGCGAGAAGTTGCCCTGATTAGCTT
 
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JMSF021G05+           CTTGGTGTTTCCAACGAGATCATCAATGAGGGTATCAATCTCGTTCCTGTCATCAGTAAG
rJMSF021G05-          CTNGGNGTTTCCAACGAGATCATCAANGAGGGTATCAATCTCGTTCCNGTCATCAGTAAG
                      ____________________________________________________________
consensus             CTTGGTGTTTCCAACGAGATCATCAATGAGGGTATCAATCTCGTTCCTGTCATCAGTAAG
 
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JMSF021G05+           CATTGCTTTGAGTAGGAAAATTGGCATTGCGGTCAAAAAACCGGCCGACGTTGGAGTATC
rJMSF021G05-          CATTGCTTTGAGTAGGAAAATTGGCATTGNGGTCAAAAAACCGGCCGACGTTGGAGTATC
                      ____________________________________________________________
consensus             CATTGCTTTGAGTAGGAAAATTGGCATTGCGGTCAAAAAACCGGCCGACGTTGGAGTATC
 
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JMSF021G05+           TGCGACTGTCGTCATAAGCGATTCCCCTTCCAACAGCATACCCGAACCCTAATCCAACAC
rJMSF021G05-          TGCNACNGTCGTCATAAGCGATTCCCCTTCCAACAGCATACCCNAACCCTAATCCAACAC
                      ____________________________________________________________
consensus             TGCGACTGTCGTCATAAGCGATTCCCCTTCCAACAGCATACCCGAACCCTAATCCAACAC
 
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JMSF021G05+           CGCAGCCGGCTCCCAATCCAAAACCGAGCTGCAACCCAGGAATCCCCGGACCAAATCCCG
rJMSF021G05-          CGCAGCCGGCTCCCAATCCAAAACCGAGCTGCAACCCAGGAATCCCCGGACCAAATCCCG
                      ____________________________________________________________
consensus             CGCAGCCGGCTCCCAATCCAAAACCGAGCTGCAACCCAGGAATCCCCGGACCAAATCCCG
 
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JMSF021G05+           TGCCTCCAATGAGACCGACCCCGAACCCGAATCCGCAGCCGATACCGACTCCAAAACCGG
rJMSF021G05-          NGCCTCCAATGANACCGACCCCGAACCCGAATCCGCAGCCNATACCGACTCCAAAACCGG
                      ____________________________________________________________
consensus             TGCCTCCAATGAGACCGACCCCGAACCCGAATCCGCAGCCGATACCGACTCCAAAACCGG
 
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JMSF021G05+           GCCCAAGCTTTCCTAATTCCTTGGAATTGATCGCCGGTAGCTTCCACAGCAAACCCTTCT
rJMSF021G05-          GCCCAAGCTTTCCTAATTCCTTGGAATTGATCGCCGGTAGCTTCCACAGNAAACCCTTCT
                      ____________________________________________________________
consensus             GCCCAAGCTTTCCTAATTCCTTGGAATTGATCGCCGGTAGCTTCCACAGCAAACCCTTCT
 
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JMSF021G05+           CTTCTTCGTCTCCGCCGTTCATCGTCTCTCCGGCAGTCTCTCGCAAGTCAGCAAGTCGCC
rJMSF021G05-          CTTCTTCGTCTCCGCCGTTCATCGTCTCTCCGGCAGTCTCTCGCAAGTCAGCAAGTCGCC
                      ____________________________________________________________
consensus             CTTCTTCGTCTCCGCCGTTCATCGTCTCTCCGGCAGTCTCTCGCAAGTCAGCAAGTCGCC