Contig 011315:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021F18Sequence690011315 (2)ref|XP_006360829.1|210PREDICTED: uncharacterized protein LOC102592067 [Solanum tuberosum]787011315 (2)ref|XP_006360829.1|250PREDICTED: uncharacterized protein LOC102592067 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF021F18-                                                            GCAGACTTAAA
                      ____________________________________________________________
consensus                                                              GCAGACTTAAA
 
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JMSF021F18-           GTTGCATAGTATAGTAATAGTATATCGTCAAACCCTTGGGACAATTGTAGGCTTTCCACT
                      ____________________________________________________________
consensus             GTTGCATAGTATAGTAATAGTATATCGTCAAACCCTTGGGACAATTGTAGGCTTTCCACT
 
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JMSF021F18-           TTCAGAGAAGCCATGGACGATTTGGGAATTCAGAAGATTCAAATCTCCGGCCCAACCCTC
                      ____________________________________________________________
consensus             TTCAGAGAAGCCATGGACGATTTGGGAATTCAGAAGATTCAAATCTCCGGCCCAACCCTC
 
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JMSF021F18-           GCCTCCCTCCTCAACCGCTTATCCGCTTCTCCCGGTGACCTTCACGGCCTTCTTTATGGC
                      ____________________________________________________________
consensus             GCCTCCCTCCTCAACCGCTTATCCGCTTCTCCCGGTGACCTTCACGGCCTTCTTTATGGC
 
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JMSF021F18-           CATGTTTCTTTCTCCACCACCAGCTCCCTCTCCGACGATACCTCCGCTTCTACTTCCGCC
                      ____________________________________________________________
consensus             CATGTTTCTTTCTCCACCACCAGCTCCCTCTCCGACGATACCTCCGCTTCTACTTCCGCC
 
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JMSF021F18-           GCGGCCGACGGCGCCAATGGCCCGATCCTCACTGCAATCATCACCTCCTTCACCTCCGTG
                      ____________________________________________________________
consensus             GCGGCCGACGGCGCCAATGGCCCGATCCTCACTGCAATCATCACCTCCTTCACCTCCGTG
 
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JMSF021F18-           CCTTCTCACCTCGCCCTGCCCCATCAATCGCACCGTCAAGATTCGTCCTCAACCCTCGTC
                      ____________________________________________________________
consensus             CCTTCTCACCTCGCCCTGCCCCATCAATCGCACCGTCAAGATTCGTCCTCAACCCTCGTC
 
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JMSF021F18-           GGCTGGTTCTCCGGCCGCCGGAGGACCCCTCTCCGCCCCTCGCTTCACGACTCCACCGCC
                      ____________________________________________________________
consensus             GGCTGGTTCTCCGGCCGCCGGAGGACCCCTCTCCGCCCCTCGCTTCACGACTCCACCGCC
 
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JMSF021F18-           ACTTTGTCTCTCAACTCCTCCACCTCTCTGTCTTTCACTCCGCAGAACTCGCCTCATTCC
                      ____________________________________________________________
consensus             ACTTTGTCTCTCAACTCCTCCACCTCTCTGTCTTTCACTCCGCAGAACTCGCCTCATTCC
 
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JMSF021F18-           GTCTCGCTACCCCCGTCTCTCTTCCTTCTCCTAACGACGCCGTTTCAGGAACAGGTCATT
rJMSF021F18+                                                               GGTCATT
                      ____________________________________________________________
consensus             GTCTCGCTACCCCCGTCTCTCTTCCTTCTCCTAACGACGCCGTTTCAGGAACAGGTCATT
 
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JMSF021F18-           CACACCCATGAGTACAAGGCTTTCCAATACCGGATTTCCACATCTTCTTTCGAGCCCAAG
rJMSF021F18+          CACACCCATGAGTACAAGGCTTTCCAATACCGGATTTCCACATCTTCTTTCGAGCCCAAG
                      ____________________________________________________________
consensus             CACACCCATGAGTACAAGGCTTTCCAATACCGGATTTCCACATCTTCTTTCGAGCCCAAG
 
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JMSF021F18-           AGCCTCGATATCATCAACATTGGTCCGTATTTCCGATCTCATTACGACTCTTTCAGCCCA
rJMSF021F18+          AGCCTCGATATCATCAACATTGGTCCGTATTTCCGATCTCATTACGACTCTTTCAGCCCA
                      ____________________________________________________________
consensus             AGCCTCGATATCATCAACATTGGTCCGTATTTCCGATCTCATTACGACTCTTTCAGCCCA
 
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JMSF021F18-           AACTCTCCATTCCCTTCTT                                         
rJMSF021F18+          AACTCTCCATTCCCTTCTTTGACCTGTGATTTGAGGTCCTCCAATGCAATGGTTGAGGAC
                      ____________________________________________________________
consensus             AACTCTCCATTCCCTTCTTTGACCTGTGATTTGAGGTCCTCCAATGCAATGGTTGAGGAC
 
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rJMSF021F18+          GAGAATACTGAGAACTCGGCTGGTATTCAACGAGGCCTGGAAGATCAGAAGGAATTGGAT
                      ____________________________________________________________
consensus             GAGAATACTGAGAACTCGGCTGGTATTCAACGAGGCCTGGAAGATCAGAAGGAATTGGAT
 
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rJMSF021F18+          ATGTGTGCCCAGGGGTTTGGAGTTGCCAGATTCAGCAAGTTAATGGGATCGAATGCCGCC
                      ____________________________________________________________
consensus             ATGTGTGCCCAGGGGTTTGGAGTTGCCAGATTCAGCAAGTTAATGGGATCGAATGCCGCC
 
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rJMSF021F18+          AATTACACTGCTGAAGTAGAAGAATTGTATGATAAAATGCTTGCCAAGCTTGATAGCTTG
                      ____________________________________________________________
consensus             AATTACACTGCTGAAGTAGAAGAATTGTATGATAAAATGCTTGCCAAGCTTGATAGCTTG
 
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rJMSF021F18+          GCCAGACTGGTGGAGAAGAGTTCTGCCAAAGTTCTTGAGCAGGAAAGTCATAATATGAAA
                      ____________________________________________________________
consensus             GCCAGACTGGTGGAGAAGAGTTCTGCCAAAGTTCTTGAGCAGGAAAGTCATAATATGAAA
 
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rJMSF021F18+          CTGAGGTGCAAGGTTGCTGGCTTGGAATGAATTTCTTTTGTTGCTTTTGTAGTCCAATCC
                      ____________________________________________________________
consensus             CTGAGGTGCAAGGTTGCTGGCTTGGAATGAATTTCTTTTGTTGCTTTTGTAGTCCAATCC
 
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rJMSF021F18+          TTGGATTTTCAAAGATCACTTGTTGGCGGAGAATGATTCGTGATCTGTCAGCATTGATGC
                      ____________________________________________________________
consensus             TTGGATTTTCAAAGATCACTTGTTGGCGGAGAATGATTCGTGATCTGTCAGCATTGATGC
 
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rJMSF021F18+          CTAAGAACACATTACTACTACTGTCAACTTCATTTTGTTGTTCTCTATAGGTAGGGCATT
                      ____________________________________________________________
consensus             CTAAGAACACATTACTACTACTGTCAACTTCATTTTGTTGTTCTCTATAGGTAGGGCATT
 
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rJMSF021F18+          TTTGGTTGATGTGCAATGAATCTCAATCTCCTCCTGAATGTACACTTACCTGGTCTGGTG
                      ____________________________________________________________
consensus             TTTGGTTGATGTGCAATGAATCTCAATCTCCTCCTGAATGTACACTTACCTGGTCTGGTG
 
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rJMSF021F18+          TTGTTTCATTATAATGTTTTTGGTAGATGTAGATTTGCCCATTTTGTTCATATCCCCTAC
                      ____________________________________________________________
consensus             TTGTTTCATTATAATGTTTTTGGTAGATGTAGATTTGCCCATTTTGTTCATATCCCCTAC
 
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rJMSF021F18+          CCCTAGTAGCTAATATGTATAATTTCTGCTCCAATCTCCATGTTGATTGTTGAGGAGGGT
                      ____________________________________________________________
consensus             CCCTAGTAGCTAATATGTATAATTTCTGCTCCAATCTCCATGTTGATTGTTGAGGAGGGT