Contig 011311:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020M09+                       GGAACCTTNGGATACATGGCTCCTGAATATGCATCAAGTGGCAAGTT
                      ____________________________________________________________
consensus                          GGAACCTTNGGATACATGGCTCCTGAATATGCATCAAGTGGCAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+                                                TTCTGGAGCTAATAACTGGACG
rJMSF020M09+          GACAGAAAAGTCCGATGTTTTTTCATTNGGGGTTGTGCTTCTGGAGCTAATAACTGGACG
                      ____________________________________________________________
consensus             GACAGAAAAGTCCGATGTTTTTTCATTNGGGGTTGTGCTTCTGGAGCTAATAACTGGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          CCAGCCTGTCGATACATCTCAGCCTTTAGGGGAAGAGAGCCTGGTTGAGTGGGCTCGACC
rJMSF020M09+          CAAGCCTGTCGATACATCTCAGCCTTTAGGGGAAGAGAGCCTGGTTGAGTGGGCTCGACC
                      ____________________________________________________________
consensus             CCAGCCTGTCGATACATCTCAGCCTTTAGGGGAAGAGAGCCTGGTTGAGTGGGCTCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          TTTGCTGAGTCAGGCTCTTGAAACCGAGGAATTTCAGCACCTAACAGATCCAAGGCTAGA
rJMSF020M09+          TTTGCTGAGTCAGGCTCTTGAAACCGAGGAATTTCAGCACCTAACAGATCCAAGGCTAGA
                      ____________________________________________________________
consensus             TTTGCTGAGTCAGGCTCTTGAAACCGAGGAATTTCAGCACCTAACAGATCCAAGGCTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          GAAAAATTATGTGGACAGTGAAATGTTCAGAATGATTGAGGCTGCTGCAGCTTGTGTTCG
rJMSF020M09+          GAAAAATTATGTGGACAGTGAAATGTTCAGAATGATTGAGGCTGCTGCAGCTTGTGTTCG
                      ____________________________________________________________
consensus             GAAAAATTATGTGGACAGTGAAATGTTCAGAATGATTGAGGCTGCTGCAGCTTGTGTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          CCATTCTTCCACAAAAAGACCACGAATGGGACAGGTTGTGAGAGCTTTTGATAGTATGGC
rJMSF020M09+          CCATTCTTCCACAAAAAGACCACGAATGGGACAGGTTGTGAGAGCTTTTGATAGTATGGC
                      ____________________________________________________________
consensus             CCATTCTTCCACAAAAAGACCACGAATGGGACAGGTTGTGAGAGCTTTTGATAGTATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          CATGTCGGACCTCACGAATGGAATGAGACTCGGTGAAAGTGAAATATTCAACTCCGCAGA
rJMSF020M09+          CATGTCGGACCTCACGAATGGAATGAGACTCGGTGAAAGTGAAATATTCAACTCCGCAGA
                      ____________________________________________________________
consensus             CATGTCGGACCTCACGAATGGAATGAGACTCGGTGAAAGTGAAATATTCAACTCCGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          ACAATCTGCAGAAATAAGGTTGTTTCAGAGGATGGCATTTGGTAGTGGGAATTACAGTAC
rJMSF020M09+          ACAATCTGCAGAAATAAGGTTGTTTCAGAGGATGGCATTTGGTAGTGGGAATTACAGTAC
                      ____________________________________________________________
consensus             ACAATCTGCAGAAATAAGGTTGTTTCAGAGGATGGCATTTGGTAGTGGGAATTACAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          AGATTTTTTCAGTCACAGTAGTTGGAATAGTTGATTCATGGTAAATACTGTTGAGGTAGT
rJMSF020M09+          AGATTTTTTCAGTCACAGTAGTTGGAATAGTTGATTCATGGTAAATACTGTTGAGGTAGT
                      ____________________________________________________________
consensus             AGATTTTTTCAGTCACAGTAGTTGGAATAGTTGATTCATGGTAAATACTGTTGAGGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          TACCGAAGTATCGACCACTGGGCTTGCCCTGCAAGTTCATCCGTTGATAAGTGGATAACT
rJMSF020M09+          TACCGAAGTATCGACCACTGGGCTTGCCCTGCAAGTTCATCCGTTGATAAGTGGATAACT
                      ____________________________________________________________
consensus             TACCGAAGTATCGACCACTGGGCTTGCCCTGCAAGTTCATCCGTTGATAAGTGGATAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          ATACTCAACTGCCAAGGTACATATTTTTGTCTCTGAGATCACAGTGCTGAAATTAGAATC
rJMSF020M09+          ATACTCAACTGCCAAGGTACATATTTTTGTCTCTGAGATCACAGTGCTGAAATTAGAATC
                      ____________________________________________________________
consensus             ATACTCAACTGCCAAGGTACATATTTTTGTCTCTGAGATCACAGTGCTGAAATTAGAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          TTGAACTTATAGAATGAATAGATTTTGTAAGTAGTTTCCATTTTTGGCTTTCTTAGACGT
rJMSF020M09+          TTGAACTTATAGAATGAATAGATTTTGTAAGTAGTTTCCATTTTTGGCTTTCTTAGACGT
                      ____________________________________________________________
consensus             TTGAACTTATAGAATGAATAGATTTTGTAAGTAGTTTCCATTTTTGGCTTTCTTAGACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF045O03+          ATTCATATTATTCTTTGCAGAGATTTTTTCCTGTAAGTAGCTGAAAATATTC        
rJMSF020M09+          ATTCATATTATTCTTTGCAGAGATTTTTTCCTGTAAGTAGCTGAAAATATTCTGTCCAAC
                      ____________________________________________________________
consensus             ATTCATATTATTCTTTGCAGAGATTTTTTCCTGTAAGTAGCTGAAAATATTCTGTCCAAC