Contig 011309:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF015C02-                      CCCGTAGTCCCGTCTCCCTAAATCCTTAGCCTAACTCAGTGTCTCAGTC
                      ____________________________________________________________
consensus                        CCCGTAGTCCCGTCTCCCTAAATCCTTAGCCTAACTCAGTGTCTCAGTC
 
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JMFF015C02-           GACTAAATCGCCGCAGCGCGCCTCGCCAGACCGGAGACCGGAGACCAGTCCCCCGGCTGC
                      ____________________________________________________________
consensus             GACTAAATCGCCGCAGCGCGCCTCGCCAGACCGGAGACCGGAGACCAGTCCCCCGGCTGC
 
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JMFF015C02-           CTACTCCGCCGCCTCCAAGCCTCCGCGAACAGACGAAGATTCTAAATTCCCAGCCTGGCT
                      ____________________________________________________________
consensus             CTACTCCGCCGCCTCCAAGCCTCCGCGAACAGACGAAGATTCTAAATTCCCAGCCTGGCT
 
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JMFF015C02-           TCTATTGCTGAACTCATTTCCAAAAGCCTTCCACTGAACTCTTCTCCCAGTGAAATTCCT
JMSF020I15-                                                              GAAATTCCA
                      ____________________________________________________________
consensus             TCTATTGCTGAACTCATTTCCAAAAGCCTTCCACTGAACTCTTCTCCCAGTGAAATTCCT
 
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JMFF015C02-           GCTTACATACCAACAAATCTTCGAAGCTCTACTCTTCCTTTCTCTTTCCGGTCATGCGTA
JMSF020I15-           GCTGACATACCAACAAATCTTCGAAGCTCTACTCTTCCTTTCTCTTTCCGATCATGCGTA
                      ____________________________________________________________
consensus             GCTTACATACCAACAAATCTTCGAAGCTCTACTCTTCCTTTCTCTTTCCGGTCATGCGTA
 
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JMFF015C02-           CGTTGGCGGTGAGGTTAAGTACGCATATTTTCAGAAGAAAGGCAGTGAATTTTCAACCCC
JMSF020I15-           CGTTAGCGGCGAGGTTAAGTACGCATATTTTCAGAAGCAAGGCAGTGAATTTTCAACCCC
                      ____________________________________________________________
consensus             CGTTGGCGGTGAGGTTAAGTACGCATATTTTCAGAAGCAAGGCAGTGAATTTTCAACCCC
 
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JMFF015C02-           AGAAGAATTTTTCTGCATCTAGCTACGGAAGAGATGAAAGATCCATAGAAGAAGAGGCTG
JMSF020I15-           AGAAGAAATTTTCTGCATCTAGCTACGGAAGAGATGAAAGATCCATAGAAGAAGAGGCTG
rJMSF020I15+                                 TACGGAAGAGATGAAAGATCCATAGAAGAAGAGGCTG
                      ____________________________________________________________
consensus             AGAAGAATTTTTCTGCATCTAGCTACGGAAGAGATGAAAGATCCATAGAAGAAGAGGCTG
 
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JMFF015C02-           AAAGGAAAATAGGGTGGCTGTTGAAACTGTTTTTTGCTGGGACTGCAACAGTTGTAGCTT
JMSF020I15-           AAAGGAAAATAGGGTGGCTGTTGAAACTGATTTTCGCTGGGACTGCAACAGTTGTAGCTT
rJMSF020I15+          AAAGGAAAATAGGGTGGCTGTTGAAACTGATTTTCGCTGGGACTGCAACAGTTGTAGCTT
                      ____________________________________________________________
consensus             AAAGGAAAATAGGGTGGCTGTTGAAACTGATTTTCGCTGGGACTGCAACAGTTGTAGCTT
 
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JMFF015C02-           ATCAGTTTTTCCCATACATGGGAGACAATCTGTTGCAGCAGTCTGTGACACTTTTACAAG
JMSF020I15-           ATCAGTTTTTCCCATACATGGGGGACAATCTGTTGGAGCAGTCTGTGACACTTTTACATG
rJMFF015C02+                                              AGCAGTCTGTGACACTTTTACAAG
rJMSF020I15+          ATCAGTTTTTCCCATACATGGGGGACAATCTGTTGGAGCAGTCTGTGACACTTTTACATG
                      ____________________________________________________________
consensus             ATCAGTTTTTCCCATACATGGGGGACAATCTGTTGGAGCAGTCTGTGACACTTTTACATG
 
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JMFF015C02-           TTAAGGATCCCTTGTTCAAAAGAATGGGAGCGTCCAGGTTGGCTCGTTTTGCCATTGATG
JMSF020I15-           TCAAGGATCCCTTGTTCAAAAGAATGGGAGCGTCCAGATTGGCTCGTTTTGCCATTGATG
rJMFF015C02+          TTAAGGATCCCTTGTTCAAAAGAATGGGAGCGTCCAGGTTGGCTCGTTTTGCCATTGATG
rJMSF020I15+          TCAAGGATCCCTTGTTCAAAAGAATGGGAGCGTCCAGATTGGCTCGTTTTGCCATTGATG
                      ____________________________________________________________
consensus             TTAAGGATCCCTTGTTCAAAAGAATGGGAGCGTCCAGGTTGGCTCGTTTTGCCATTGATG
 
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JMFF015C02-           ATGAAAGACGGATGAAAATTATTGAAA                                 
JMSF020I15-           ATGAAAGACGGATGAAAATTATTGAAATGGGTGGAGCTCAAGAACTTCTGAAGATGTTGG
rJMFF015C02+          ATGAAAGACGGATGAAAATTATTGAAATGGGTGGAGCTCAAGAACTTGTGAAGATGTTGG
rJMSF020I15+          ATGAAAGACGGATGAAAATTATTGAAATGGGTGGAGCTCAAGAACTTCTGAAGATGTTGG
                      ____________________________________________________________
consensus             ATGAAAGACGGATGAAAATTATTGAAATGGGTGGAGCTCAAGAACTTCTGAAGATGTTGG
 
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JMSF020I15-           AGGCTGCTAAAGATGACCGCACTAGGAAGGAAGCTTTAAAGGCTCTTTTTGCTATCTCAA
rJMFF015C02+          AGGCTGCTAAAGATGACCGCACAAGGAAGGAAGCTTTAAAGGCTCTGTTTGCTATCTCAA
rJMSF020I15+          AGGCTGCTAAAGATGACCGCACTAGGAAGGAAGCTTTAAAGGCTCTTTTTGCTATCTCAA
                      ____________________________________________________________
consensus             AGGCTGCTAAAGATGACCGCACTAGGAAGGAAGCTTTAAAGGCTCTTTTTGCTATCTCAA
 
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JMSF020I15-           AATCAGATGAAGCTGCTGCGGTCTTGCAAGTCGGTGGAGCAATATCAGCTATCAAGTCCA
rJMFF015C02+          AATCAGATGGAGCTGCTGCGGTCTTGCAAGTCGGTGGAGCAATATCAGCTATCAAGTCCA
rJMSF020I15+          AATCAGATGAAGCTGCTGCGGTCTTGCAAGTCGGTGGAGCAATATCAGCTATCAAGTCCA
                      ____________________________________________________________
consensus             AATCAGATGAAGCTGCTGCGGTCTTGCAAGTCGGTGGAGCAATATCAGCTATCAAGTCCA
 
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JMSF020I15-           ---CCCCTGGTTCCCTGGAGGATGCTGAAGTTGAGAAATACAAGTCAAATTTGTTGAATA
rJMFF015C02+          TCCCCGCTGGTTCCCTCGAGGATGCTGAAGTTGAGAAGTACAAGTCAAATTTGTTGAGTA
rJMSF020I15+          ---CCCCTGGTTCCCTGGAGGATGCTGAAGTTGAGAAATACAAGTCAAATTTGTTGAATA
                      ____________________________________________________________
consensus             ---CCCCTGGTTCCCTGGAGGATGCTGAAGTTGAGAAATACAAGTCAAATTTGTTGAATA
 
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JMSF020I15-           GATTCCAAGTTTTGAGATATGA---TGTTGGCTCTGACCCTTAGATGTAATTTATCTTGT
rJMFF015C02+          GATTCCAAGATCTGAGATATGATAATGTTAGCTCTGATCCTTAGATGTAATTTATCTTGT
rJMSF020I15+          GATTCCAAGTTTTGAGATATGA---TGTTGGCTCTGACCCTTAGATGTAATTTATCTTGT
                      ____________________________________________________________
consensus             GATTCCAAGTTTTGAGATATGA---TGTTGGCTCTGACCCTTAGATGTAATTTATCTTGT
 
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JMSF020I15-           TTCTATTGCTTTCNTTTAGCTTTTA                                   
rJMFF015C02+          TTCTATTGCTTCCTTTTAGCCTTTA                                   
rJMSF020I15+          TTCTATTGCTTTCTTTTAGCTTTTATTTTTACTCATTAGTGACACTGATGGACAGAAATT
                      ____________________________________________________________
consensus             TTCTATTGCTTTCTTTTAGCTTTTATTTTTACTCATTAGTGACACTGATGGACAGAAATT
 
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rJMSF020I15+          TACTTGACATGTTAGCAACACCAATAGTAGGGTTTTTTTGCAGGCCACATAGGATTAGGT
                      ____________________________________________________________
consensus             TACTTGACATGTTAGCAACACCAATAGTAGGGTTTTTTTGCAGGCCACATAGGATTAGGT
 
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rJMSF020I15+          GGGAAGAGAAAAACAAGGGAAAAAAAGGAAAATACTACATGTACTTTCATTTTTTACTCT
                      ____________________________________________________________
consensus             GGGAAGAGAAAAACAAGGGAAAAAAAGGAAAATACTACATGTACTTTCATTTTTTACTCT
 
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rJMSF020I15+          TAACTAGTATTTTCACCTGTGCGATGCACGTAATGAAATTGTTGTAATATATTAAGAATA
                      ____________________________________________________________
consensus             TAACTAGTATTTTCACCTGTGCGATGCACGTAATGAAATTGTTGTAATATATTAAGAATA