Contig 011306:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015D04Sequence345011987 (3)ref|XP_009766049.1|1e-20PREDICTED: uncharacterized protein LOC104217480 isoform X2 [Nicotiana sylvestri767011306 (3)ref|XP_009766049.1|2e-54PREDICTED: uncharacterized protein LOC104217480 isoform X2 [Nicotiana sylvestri
JMSF019O07Sequence416011987 (3)ref|XP_009617938.1|133PREDICTED: uncharacterized protein LOC104110193 [Nicotiana tomentosiformis]773011306 (3)ref|XP_004233343.1|261PREDICTED: uncharacterized protein LOC101262377 [Solanum lycopersicum]
JMSF019P19Sequence247011987 (3)ref|XP_009766048.1|9e-06PREDICTED: uncharacterized protein LOC104217480 isoform X1 [Nicotiana sylvestri723011306 (3)gb|KJB11419.1|1e-15hypothetical protein B456_001G257900 [Gossypium raimondii] gb|KJB11421.1| hypoth

Alignment

This contig is upended


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rJMSF019O07+                                       GTTAGACTTGTATAGTGTACAGGATCTGNTG
                      ____________________________________________________________
consensus                                          GTTAGACTTGTATAGTGTACAGGATCTGNTG
 
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rJMSF019O07+          GTATTGAAGCTATCAGCAGAGGCTGTTCAGAGGTGCATTTTGTTGAGATGGATCCTTGGG
                      ____________________________________________________________
consensus             GTATTGAAGCTATCAGCAGAGGCTGTTCAGAGGTGCATTTTGTTGAGATGGATCCTTGGG
 
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rJMSF019O07+          TAGTCTCAGATATTCTGCGCCCAAACTTAGAATGGACTGGTTTCCTTGATGCTTCAGTTA
rJMSF015D04+                                          TGGACTGGTTTCCNTGATGCTTCAGTTA
                      ____________________________________________________________
consensus             TAGTCTCAGATATTCTGCGCCCAAACTTAGAATGGACTGGTTTCCTTGATGCTTCAGTTA
 
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rJMSF019O07+          TACATACTGTTCGTGTTGAAAACTTTTTGGAGCAAGCAGAACATTTTGTTGGCAAATATG
rJMSF015D04+          TACATACTGTTCGTGTTGAAAACTTTTTGGAGCAAGCAGAACATTTTGTTGGCAAATATG
                      ____________________________________________________________
consensus             TACATACTGTTCGTGTTGAAAACTTTTTGGAGCAAGCAGAACATTTTGTTGGCAAATATG
 
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rJMSF019O07+          GGGCTTTTGACTATATTAGTGTCACGCCTCCATACATGGAAGTAGATTATGGCATATTGA
rJMSF015D04+          GGGCTTTTGACTATATTAGTGTCACGCCTCCATACATGGAAGTAGATTATGGCATATTGA
                      ____________________________________________________________
consensus             GGGCTTTTGACTATATTAGTGTCACGCCTCCATACATGGAAGTAGATTATGGCATATTGA
 
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rJMSF019O07+          TGAATCAAGTTTCAAAATCCTCAGTTGTGGGGGAGGATACCTTCATAGTAGTAGAGTACC
rJMSF015D04+          TGAATCAAGTTTCAAAATCCTCAGTTGTGGGGGAGGATACCTTCATAGTAGTAGAGTACC
rJMSF019P19+                                                         GTAGTAGAGTACC
                      ____________________________________________________________
consensus             TGAATCAAGTTTCAAAATCCTCAGTTGTGGGGGAGGATACCTTCATAGTAGTAGAGTACC
 
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rJMSF019O07+          CTTTAAGAACTGACATGCCAGATTCATGTGGCGGCCTTCTGAAGATATCTGATCGACGGT
rJMSF015D04+          CTTTAAGAACTGACATGCCAGATTCATGTGGCGGCCTTCTGAAGATATCTGATCGACGGT
rJMSF019P19+          CTTTAAGAACTGACATGCCAGATTCATGTGGCGGCCTTCTGAAGATATCTGATCGACGGT
                      ____________________________________________________________
consensus             CTTTAAGAACTGACATGCCAGATTCATGTGGCGGCCTTCTGAAGATATCTGATCGACGGT
 
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rJMSF019O07+          TTGGTCGAACACATCTAGCCATATATGGACCAAAGTGGGCACAAAAAAGACGAAATTGAG
rJMSF015D04+          TTGGTCGAACACATCTAGCCATATATGGACCAAAGTGGGCACAAAAAAGACGAAATTGAG
rJMSF019P19+          TTGGTCGAACACATCTAGCCATATATGGACCAAAGTGGGCACAAAAAAGACGAAATTGAG
                      ____________________________________________________________
consensus             TTGGTCGAACACATCTAGCCATATATGGACCAAAGTGGGCACAAAAAAGACGAAATTGAG
 
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rJMSF019O07+          GAAAGACTCCTATGGACAAAGTAGACAGAGCCTGATACAAGTAGAAAGTGGATATGGCAA
rJMSF015D04+          GAAAGACTCCTATGGACAAAGTAGACAGAGCCTGATACAAGTAGAAAGTGGATATGGCAA
rJMSF019P19+          GAAAGACTCCTATGGACAAAGTAGACAGAGCCTGATACAAGTAGAAAGTGGATATGGCAA
                      ____________________________________________________________
consensus             GAAAGACTCCTATGGACAAAGTAGACAGAGCCTGATACAAGTAGAAAGTGGATATGGCAA
 
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rJMSF019O07+          TGTGCAATTTTCTTTTGTGGAAGCCATGTGCATCTCATACTAGACTTAAAAGGGGTGCGA
rJMSF015D04+          TGTGCAATTTTCTTTTGTGGAAGCCATGTGCATCTCATACTAGACTTAAAAGGGGTGCGA
rJMSF019P19+          TGTGCAATTTTCTTTTGTGGAAGCCATGTGCATCTCATACTAGACTTAAAAGGGGTGCGA
                      ____________________________________________________________
consensus             TGTGCAATTTTCTTTTGTGGAAGCCATGTGCATCTCATACTAGACTTAAAAGGGGTGCGA
 
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rJMSF019O07+          CCTGTATTGCCGTCAAACGTGGCTATATTGGCATGGTCAATTACTTCTATCGCACTTTCT
rJMSF015D04+          CCTGTATTGCCGTCAAACGTGGCTATATTGGCATGGTCAATTACTTCTATCGCACTTTCT
rJMSF019P19+          CCTGTATTGCCGTCAAACGTGGCTATATTGGCATGGTCAATTACTTCTATCGCACTTTCT
                      ____________________________________________________________
consensus             CCTGTATTGCCGTCAAACGTGGCTATATTGGCATGGTCAATTACTTCTATCGCACTTTCT
 
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rJMSF019O07+          TCTATCCTAGCTTTTTGATGAGTATGAGGATCTACCGGTTGCCTAGGCATAACATTCTGA
rJMSF015D04+          TCTATCCTAGCTTTTTGATGAGTATGAGGATCTACCGGTTGCCTAGGCATAACATTCTGA
rJMSF019P19+          TCTATCCTAGCTTTTTGATGAGTATGAGGATCTACCGGTTGCCTAGGCATAACATTCTGA
                      ____________________________________________________________
consensus             TCTATCCTAGCTTTTTGATGAGTATGAGGATCTACCGGTTGCCTAGGCATAACATTCTGA
 
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rJMSF019O07+          GCCAATTGTGAGAAAGCAACATTATTAGTTTCTACTGAAAGTTTTAGTTTAGTAGCTGAT
rJMSF015D04+          GCCAATTGTGAGAAAGCAACATTATTAGTTTCTACTGAAAGTTTTAGTTTAGTAGCTGAT
rJMSF019P19+          GCCAATTGTGAGAAAGCAACATTATTAGTTTCTACTGAAAGTTTTAGTTTAGTAGCTGAT
                      ____________________________________________________________
consensus             GCCAATTGTGAGAAAGCAACATTATTAGTTTCTACTGAAAGTTTTAGTTTAGTAGCTGAT
 
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rJMSF019O07+          CTGTACCTATATAAAACACTT                                       
rJMSF015D04+          CTGTACCTATATAAAACACTTTCTTCAATTCTGTAAGTTATTAATCCATTTACCATCACT
rJMSF019P19+          CTGTACCTATATAAAACACTTTCTTCAATTCTGTAAGTTATTAATCCATTTACCATCACT
                      ____________________________________________________________
consensus             CTGTACCTATATAAAACACTTTCTTCAATTCTGTAAGTTATTAATCCATTTACCATCACT
 
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rJMSF015D04+          TTTACAGTGTGCTGATGTTCAGTGAACCTCACTATAAGGGATTTGTCTGTTTTTAGTAGG
rJMSF019P19+          TTTACAGTGTGCTGATGTTCAGTGAACCTCACTATAAGGGATTTGTCTGTTTTTAGTAGG
                      ____________________________________________________________
consensus             TTTACAGTGTGCTGATGTTCAGTGAACCTCACTATAAGGGATTTGTCTGTTTTTAGTAGG
 
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rJMSF015D04+          ATGCTGCAATGCATTT                                            
rJMSF019P19+          ATGCTGCAATGCATTTTGGGTTCCAAGAGAGTTTCATTGGCCCTTGCTTTAATTATGTAT
                      ____________________________________________________________
consensus             ATGCTGCAATGCATTTTGGGTTCCAAGAGAGTTTCATTGGCCCTTGCTTTAATTATGTAT
 
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rJMSF019P19+          ATTAGAACTATTCCTGTAAATGGTGTTTTGTGCCAAACAGCATTTAGTGCCTGTCGGTTT
                      ____________________________________________________________
consensus             ATTAGAACTATTCCTGTAAATGGTGTTTTGTGCCAAACAGCATTTAGTGCCTGTCGGTTT