Contig 011305:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF028A18-                                                            GCTAGTGAGGA
rJMSF028A18+                                                                  AGGA
                      ____________________________________________________________
consensus                                                              GCTAGTGAGGA
 
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JMSF028A18-           GGTTGATGATGATGCTGAAAGCCTATCGTTTGCTGTAGCAGCGGCTAAAGTTGCAAATGA
rJMSF028A18+          GGTTGATGATGATGCTGAAAGCCTATCGTTTGCTGTAGCAGCGGCTAAAGTTGCAAATGA
                      ____________________________________________________________
consensus             GGTTGATGATGATGCTGAAAGCCTATCGTTTGCTGTAGCAGCGGCTAAAGTTGCAAATGA
 
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JMSF028A18-           GGTGAAGGCTGCTGACATAAAAGTTCTTTTTGTGAAGCCCTTAGTTTATTGGACTCGATT
rJMSF028A18+          GGTGAAGGCTGCTGACATAAAAGTTCTTTTTGTGAAGCCCTTAGTTTATTGGACTCGATT
                      ____________________________________________________________
consensus             GGTGAAGGCTGCTGACATAAAAGTTCTTTTTGTGAAGCCCTTAGTTTATTGGACTCGATT
 
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JMSF028A18-           TTTCATCATTGCCACTGCATTTTCCCGCCCACAAATTGATGCCGTTGGGACCAGGATAAG
rJMSF028A18+          TTTCATCATTGCCACTGCATTTTCCCGCCCACAAATTGATGCCGTTGGGACCAGGATAAG
                      ____________________________________________________________
consensus             TTTCATCATTGCCACTGCATTTTCCCGCCCACAAATTGATGCCGTTGGGACCAGGATAAG
 
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JMSF028A18-           AGATATGGCCGAGGAACAGTATGGAAGAGTTGCATCTGGAGATACAAAGCCGAATTCATG
rJMSF028A18+          AGATATGGCCGAGGAACAGTATGGAAGAGTTGCATCTGGAGATACAAAGCCGAATTCATG
                      ____________________________________________________________
consensus             AGATATGGCCGAGGAACAGTATGGAAGAGTTGCATCTGGAGATACAAAGCCGAATTCATG
 
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JMSF028A18-           GACGTTGCTGGACTTTGGTGATGTAGTGGTACATATATTTCTGCCTGAACAACGTGAGTT
rJMSF028A18+          GACGTTGCTGGACTTTGGTGATGTAGTGGTACATATATTTCTGCCTGAACAACGTGAGTT
rJMSF019O17+                          GGTGATGTAGTGGTACATATATTTCTGCCTGAACAACGTGAGTT
                      ____________________________________________________________
consensus             GACGTTGCTGGACTTTGGTGATGTAGTGGTACATATATTTCTGCCTGAACAACGTGAGTT
 
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JMSF028A18-           CTATAACCTGGAAGAGTTCTATGCGAATGCAACACCTGTTGATCTGCCTTTTGAAAATCA
rJMSF028A18+          CTATAACCTGGAAGAGTTCTATGCGAATGCAACACCTGTTGATCTGCCTTTTGAAAATCA
rJMSF019O17+          CTATAACCTGGAAGAGTTCTATGCGAATGCAACACCTGTTGATCTGCCTTTTGAAAATCA
                      ____________________________________________________________
consensus             CTATAACCTGGAAGAGTTCTATGCGAATGCAACACCTGTTGATCTGCCTTTTGAAAATCA
 
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JMSF028A18-           ACAGTTTCGACAGCTAAAAGGTTTCTGAAACTTGACAATTTGAGCCTCTGATCTAGCGAA
rJMSF028A18+          ACAGTTTCGACAGCTAAAAGGTTTCTGAAACTTGACAATTTGAGCCTCTGATCTAGCGAA
rJMSF019O17+          ACAGTTTCGACAGCTAAAAGGTTTCTGAAACTTGACAATTTGAGCCTCTGATCTAGCGAA
                      ____________________________________________________________
consensus             ACAGTTTCGACAGCTAAAAGGTTTCTGAAACTTGACAATTTGAGCCTCTGATCTAGCGAA
 
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JMSF028A18-           GGGACTAAAAGGCCGGGTTGGCAAATCAACAGGCAGGATATGGTTGAGAATTGGCAAGAT
rJMSF028A18+          GGGACTAAAAGGCCGGGTTGGCAAATCAACAGGCAGGATATGGTTGAGAATTGGCAAGAT
rJMSF019O17+          GGGACTAAAAGGCCGGGTTGGCAAATCAACAGGCAGGATATGGTTGAGAATTGGCAAGAT
                      ____________________________________________________________
consensus             GGGACTAAAAGGCCGGGTTGGCAAATCAACAGGCAGGATATGGTTGAGAATTGGCAAGAT
 
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JMSF028A18-           ATCGTTGGTTAACTCCATTATATATGCCATTACCTGCTAGTGTCAACAGGAGGGAGGGGT
rJMSF028A18+          ATCGTTGGTTAACTCCATTATATATGCCATTACCTGCTAGTGTCAACAGGAGGGAGGGGT
rJMSF019O17+          ATCGTTGGTTAACTCCATTATATATGCCATTACCTGCTAGTGTCAACAGGAGGGAGGGGT
                      ____________________________________________________________
consensus             ATCGTTGGTTAACTCCATTATATATGCCATTACCTGCTAGTGTCAACAGGAGGGAGGGGT
 
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JMSF028A18-           TCACAAATTTTGATGATATGTGTGCTCCCTTTACTGCTCTTGATTGAAAAGGAAAAAGAT
rJMSF028A18+          TCACAAATTTTGATGATATGTGTGCTCCCTTTACTGCTCTTGATTGAAAAGGAAAAAGAT
rJMSF019O17+          TCACAAATTTTGATGATATGTGTGCTCCCTTTACTGCTCTTGATTGAAAAGGAAAAAGAT
                      ____________________________________________________________
consensus             TCACAAATTTTGATGATATGTGTGCTCCCTTTACTGCTCTTGATTGAAAAGGAAAAAGAT
 
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JMSF028A18-           GTAATCAACATGGCATAAAAAATGACAGGTACTCTTGTAGCCTTCCTTGTATTTGCTCCT
rJMSF028A18+          GTAATCAACATGGCATAAAAAATGACAGGTACTCTTGTAGCCTTCCTTGTATTTGCTCCT
rJMSF019O17+          GTAATCAACATGGCATAAAAAATGACAGGTACTCTTGTAGCCTTCCTTGTATTTGCTCCT
                      ____________________________________________________________
consensus             GTAATCAACATGGCATAAAAAATGACAGGTACTCTTGTAGCCTTCCTTGTATTTGCTCCT
 
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JMSF028A18-           AATACTTCCTAG                                                
rJMSF028A18+          AATACTTCCTAGCAATATAAAATGAAAACATTGCATTACTCGATGAGATAGTATTTTCAG
rJMSF019O17+          AATACTTCCTAGCAATATAAAATGAAAACATTGCATTACTCGATGAGATAGTATTTTCAG
                      ____________________________________________________________
consensus             AATACTTCCTAGCAATATAAAATGAAAACATTGCATTACTCGATGAGATAGTATTTTCAG
 
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rJMSF028A18+          TTCTCGTTTAACTTAGAAACTAGTGGTATGTACTTCTCAT                    
rJMSF019O17+          TTCTCGTTTAACTTAGAAACTAGTGGTATGTACTTCTCATTTCTGAGTGGAAGGGACATT
                      ____________________________________________________________
consensus             TTCTCGTTTAACTTAGAAACTAGTGGTATGTACTTCTCATTTCTGAGTGGAAGGGACATT