Contig 011304:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019K09Sequence587011304 (2)ref|XP_011071098.1|8e-74PREDICTED: RNA-binding protein 48 isoform X1 [Sesamum indicum] ref|XP_011071100.774011304 (2)emb|CDP12133.1|2e-54unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF019K09-                                    GAAGCCTTTTCAGTGGTCCGTCCCCTCCGGCCAAG
                      ____________________________________________________________
consensus                                      GAAGCCTTTTCAGTGGTCCGTCCCCTCCGGCCAAG
 
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JMSF019K09-           GTATGCCTCGATTCAGAGACGAGACTCCTGCAGTGCGCGTTTATACTGTTTGCGATGAAT
                      ____________________________________________________________
consensus             GTATGCCTCGATTCAGAGACGAGACTCCTGCAGTGCGCGTTTATACTGTTTGCGATGAAT
 
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JMSF019K09-           CGAAATTTTTGATTGTGAGGAACGTTCCATCTCTGGGTTGTGGTGATGATCTCGCAAAAT
                      ____________________________________________________________
consensus             CGAAATTTTTGATTGTGAGGAACGTTCCATCTCTGGGTTGTGGTGATGATCTCGCAAAAT
 
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JMSF019K09-           TGTTCACCACTTATGGAGAAGTTGAAGAATGTAAACCCATGGATGCCGAAGACTGTGAAC
                      ____________________________________________________________
consensus             TGTTCACCACTTATGGAGAAGTTGAAGAATGTAAACCCATGGATGCCGAAGACTGTGAAC
 
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JMSF019K09-           CATTTACTGATGTCTACTGGATCAAGTTCCAAAGGGTAGACAATGCCAGGTTTGCCAAGA
rJMSF019K09+                CTGATGTCTACTGGATCCAGTTCCAAAGGGTAGACAATGCCAGGTTTGCCAAGA
                      ____________________________________________________________
consensus             CATTTACTGATGTCTACTGGATCCAGTTCCAAAGGGTAGACAATGCCAGGTTTGCCAAGA
 
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JMSF019K09-           GGAAATTGGATGAGTTTGTATTCCTCGGGAACAGGCTCCAGGTCTCTTATGCACCTCAAT
rJMSF019K09+          GGAAATTGGATGAGTTTGTATTCCTCGGGAACAGGCTCCAGGTCTCTTATGCACCTCAAT
                      ____________________________________________________________
consensus             GGAAATTGGATGAGTTTGTATTCCTCGGGAACAGGCTCCAGGTCTCTTATGCACCTCAAT
 
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JMSF019K09-           ATGAGAGCCTATCTGATACAAAGGAGAAGTTAGAGGGGAGGAGAAGGGAAGTTCAAACAC
rJMSF019K09+          ATGAGAGCCTATCTGATACAAAGGAGAAGTTAGAGGGGAGGAGAAGGGAAGTTCAAACAC
                      ____________________________________________________________
consensus             ATGAGAGCCTATCTGATACAAAGGAGAAGTTAGAGGGGAGGAGAAGGGAAGTTCAAACAC
 
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JMSF019K09-           GAGTAAACTCTCAAAGATCCAAAAGTTCTGCAATCCCGGGGCCGGGGCCTGATGCTGCCA
rJMSF019K09+          GAGTAAACTCTCAAAGATCCAAAAGTTCTGCAATCCCGGGGCCGGGGCCTGATGCTGCCA
                      ____________________________________________________________
consensus             GAGTAAACTCTCAAAGATCCAAAAGTTCTGCAATCCCGGGGCCGGGGCCTGATGCTGCCA
 
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JMSF019K09-           GCAAATCTATAATCACTTCAACCTCTTCACATATAACTTCTAAACCATTAGAAATTAATC
rJMSF019K09+          GCAAATCTATAATCACTTCAACCTCTTCACATATAACTTCTAAACCATTAGAAATTAATC
                      ____________________________________________________________
consensus             GCAAATCTATAATCACTTCAACCTCTTCACATATAACTTCTAAACCATTAGAAATTAATC
 
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JMSF019K09-           AAAGTCAGTTCATGGAGCCACAGGAGACCGCTAATAATAGAGATTCCTCTATGACTATNG
rJMSF019K09+          AAAGTCAGTTCATGGAGCCACAGGAGACCGCTAATAATAGAGATTCCTCTATGACTATAG
                      ____________________________________________________________
consensus             AAAGTCAGTTCATGGAGCCACAGGAGACCGCTAATAATAGAGATTCCTCTATGACTATAG
 
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JMSF019K09-           TATCATCTAACA                                                
rJMSF019K09+          TATCATCTAACAAGGAATATTTTTCATCAGAATCTATGAATCAAACTGTTCGGTTGGTTA
                      ____________________________________________________________
consensus             TATCATCTAACAAGGAATATTTTTCATCAGAATCTATGAATCAAACTGTTCGGTTGGTTA
 
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rJMSF019K09+          GGGAAAAACTAAATAAGATACAATCCAGTGCAGAACATTCAGAAGCCGGAGCTTCCAAGA
                      ____________________________________________________________
consensus             GGGAAAAACTAAATAAGATACAATCCAGTGCAGAACATTCAGAAGCCGGAGCTTCCAAGA
 
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rJMSF019K09+          AAGTGCGAGTGGACAATAGGAGGAGAATTTGACAAGTTTCTGACAAGTGATGAGAAAAGA
                      ____________________________________________________________
consensus             AAGTGCGAGTGGACAATAGGAGGAGAATTTGACAAGTTTCTGACAAGTGATGAGAAAAGA
 
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rJMSF019K09+          AGTTGCTGTTGTTAATACAAGGTTTCATGTCTTCCATCTATCTCTATACTAAAATTGCTA
                      ____________________________________________________________
consensus             AGTTGCTGTTGTTAATACAAGGTTTCATGTCTTCCATCTATCTCTATACTAAAATTGCTA
 
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rJMSF019K09+          TGCTAGGTTAATTGATTTACGTATAGGGGTGTTAATGAACAGAGCTTTAGATAGACTACT
                      ____________________________________________________________
consensus             TGCTAGGTTAATTGATTTACGTATAGGGGTGTTAATGAACAGAGCTTTAGATAGACTACT
 
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rJMSF019K09+          CGTGTTTGTATTTGGTAAGCGTTCGTTTACCTTCGCTTATTAAGGTAAACGAATATAAAT
                      ____________________________________________________________
consensus             CGTGTTTGTATTTGGTAAGCGTTCGTTTACCTTCGCTTATTAAGGTAAACGAATATAAAT
 
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rJMSF019K09+          GAACAAATTTTAGAGCTCGTTTAATAAACGAATAGAATATGAACATTTGTATGCTTGTTG
                      ____________________________________________________________
consensus             GAACAAATTTTAGAGCTCGTTTAATAAACGAATAGAATATGAACATTTGTATGCTTGTTG