| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF016A23 | Sequence | 226 | 011965 (2) | emb|CDP02742.1| | 7e-13 | unnamed protein product [Coffea canephora] | 746 | 011298 (4) | ref|XP_004234578.1| | 7e-82 | PREDICTED: MATE efflux family protein 9-like [Solanum lycopersicum] |
| JMSF017A23 | Sequence | 704 | 011298 (4) | ref|XP_004234578.1| | 5e-73 | PREDICTED: MATE efflux family protein 9-like [Solanum lycopersicum] | |||||
| JMSF018A23 | Sequence | 152 | 011965 (2) | emb|CDP02742.1| | 3e-10 | unnamed protein product [Coffea canephora] | 714 | 011298 (4) | ref|XP_004234578.1| | 9e-89 | PREDICTED: MATE efflux family protein 9-like [Solanum lycopersicum] |
| JMSF044J10 | Sequence | 774 | 010226 (3) | ref|XP_004232021.1| | 4e-105 | PREDICTED: MATE efflux family protein 9-like isoform X1 [Solanum lycopersicum] | 752 | 011298 (4) | ref|XP_004234578.1| | 2e-87 | PREDICTED: MATE efflux family protein 9-like [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF016A23+ GGTGG
rJMSF044J10+ GCATGGTTTGTCTTGAATGGTGG
rJMSF018A23+ GAGTTTGTGCGCTTGGCTATCCCCTCGACAGGCATGGTTTGTCTTGAATGGTGG
____________________________________________________________
consensus GAGTTTGTGCGCTTGGCTATCCCCTCGACAGGCATGGTTTGTCTTGAATGGTGG
. : . : . : . : . : . :
rJMSF017A23+ TAATCCCGAACTTGAGGCTTCA
rJMSF016A23+ ACGTATGAAATAGTTATATTGCTTTCTGGACTTTTGCCTAATCCCGAACTTGAGGCTTCA
rJMSF044J10+ ACGTATGAAATAGTTATATTGCTTTCTGGACTTTTGCCTAATCCCGAACTTGAGGCTTCA
rJMSF018A23+ ACGTATGAAATAGTTATATTGCTTTCTGGACCTTTGCCTAATCCCGAACTTGAGGCTTCA
____________________________________________________________
consensus ACGTATGAAATAGTTATATTGCTTTCTGGACTTTTGCCTAATCCCGAACTTGAGGCTTCA
. : . : . : . : . : . :
rJMSF017A23+ GTTCTCTCAATATGCCTTTTGATTGCTTCATCGCACTACTTCATCCCGTTTTCCATTGGT
rJMSF016A23+ GTTCTCTCAATATGCCTTTTGATTGCTTCATCGCACTACTTCATCCCGTTTTCCATTGGT
rJMSF044J10+ GTTCTCTCAATATGCCTTTTGATTGCTTCATCGCACTACTTCATCCCGTTTTCCATTGGT
rJMSF018A23+ GTTCTCTCAATATGCCTTTTGATTGCTTCATCGCACTACTTCATCCCGTTTTCCATTGGT
____________________________________________________________
consensus GTTCTCTCAATATGCCTTTTGATTGCTTCATCGCACTACTTCATCCCGTTTTCCATTGGT
. : . : . : . : . : . :
rJMSF017A23+ GCTGCGGCAAGCACTCGAGTCTCGAATGAACTCGGGGCAGGAAACTCAGAGGCAGCACGA
rJMSF016A23+ GCTGCGGCAAGCACTCGAGTCTCGAATGAACTCGGGGCAGGAAACTCAGAGGCAGCACGA
rJMSF044J10+ GCTGCGGCAAGCACTCGAGTCTCGAATGAACTCGGGGCAGGAAACTCAGAGGCAGCACGA
rJMSF018A23+ GCTGCGGCAAGCACTCGAGTCTCGAATGAACTCGGGGCAGGAAACTCAGAGGCAGCACGA
____________________________________________________________
consensus GCTGCGGCAAGCACTCGAGTCTCGAATGAACTCGGGGCAGGAAACTCAGAGGCAGCACGA
. : . : . : . : . : . :
rJMSF017A23+ ATTGCTGTTTTGGCAGTGCTGGTTCTGACACTCTTGGAGTCAGTAGTCGCGAACACAGCT
rJMSF016A23+ ATTGCTGTTTTGGCAGTGCTGGTTCTGACACTCTTGGAGTCAGTAGTCGCGAACACAGCT
rJMSF044J10+ ATTGCTGTTTTGGCAGTGCTGGTTCTGACACTCTTGGAGTCAGTAGTCGCGAACACAGCT
rJMSF018A23+ ATTGCTGTTTTGGCAGTGCTGGTTCTGACACTCTTGGAGTCAGTAGTCGCGAACACAGCT
____________________________________________________________
consensus ATTGCTGTTTTGGCAGTGCTGGTTCTGACACTCTTGGAGTCAGTAGTCGCGAACACAGCT
. : . : . : . : . : . :
rJMSF017A23+ CTACTTTGCTCCAGCCGGGTTCTGGGATTTGCGTTCAGCAACGAAAAGGAAGTTGTGGAT
rJMSF016A23+ CTACTTTGCTCCAGCCGGGTTCTGGGATTTGCGTTCAGCAACGAAAAGGAAGTTGTGGAT
rJMSF044J10+ CTACTTTGCTCCAGCCGGGTTCTGGGATTTGCGTTCAGCAACGAAAAGGAAGTTGTGGAT
rJMSF018A23+ CTACTTTGCTCCAGCCGGGTTCTGGGATTTGCGTTCAGCAACGAAAAGGAAGTTGTGGAT
____________________________________________________________
consensus CTACTTTGCTCCAGCCGGGTTCTGGGATTTGCGTTCAGCAACGAAAAGGAAGTTGTGGAT
. : . : . : . : . : . :
rJMSF017A23+ TACATAGGAGCAATGGTTCCTTTTGTCTGTCTGTTGGTCTTGACAGATTGCATCCAGGGA
rJMSF016A23+ TACATAGGAGCAATGGTTCCTTTTGTCTGTCTGTTGGTCTTGACAGATTGCATCCAGGGA
rJMSF044J10+ TACATAGGAGCAATGGTTCCTTTTGTCTGTCTGTTGGTCTTGACAGATTGCATCCAGGGA
rJMSF018A23+ TACATAGGAGCAATGGTTCCTTTTGTCTGTCTGTTGGTCTTGACAGATTGCATCCAGGGA
____________________________________________________________
consensus TACATAGGAGCAATGGTTCCTTTTGTCTGTCTGTTGGTCTTGACAGATTGCATCCAGGGA
. : . : . : . : . : . :
rJMSF017A23+ GTACTCTCTGGAGTCGTGAGAGGGAACGGGAGGCAGCGTTCTGGAGCATTCATCAATCTT
rJMSF016A23+ GTACTCTCTGGAGTCGTGAGAGGGAACGGGAGGCAGCGTTCTGGAGCATTCATCAATCTT
rJMSF044J10+ GTACTCTCTGGAGTCGTGAGAGGGAACGGGAGGCAGCGTTCTGGAGCATTCATCAATCTT
rJMSF018A23+ GTACTCTCTGGAGTCGTGAGAGGGAACGGGAGGCAGCGTTCTGGAGCATTCATCAATCTT
____________________________________________________________
consensus GTACTCTCTGGAGTCGTGAGAGGGAACGGGAGGCAGCGTTCTGGAGCATTCATCAATCTT
. : . : . : . : . : . :
rJMSF017A23+ GGATCGTTCTATTCGGTGGGATTGCCAGTGGCAATAATTCTCGGTTTTGTTGCTCACGGG
rJMSF016A23+ GGATCGTTCTATTCGGTGGGATTGCCAGTGGCAATAATTCTCGGTTTTGTTGCTCACGGG
rJMSF044J10+ GGATCGTTCTATTCGGTGGGATTGCCAGTGGCAATAATTCTCGGTTTTGTTGCTCACGGG
rJMSF018A23+ GGATCGTTCTATTCGGTGGGATTGCCAGTGGCAATAATTCTCGGTTTTGTTGCTCACGGG
____________________________________________________________
consensus GGATCGTTCTATTCGGTGGGATTGCCAGTGGCAATAATTCTCGGTTTTGTTGCTCACGGG
. : . : . : . : . : . :
rJMSF017A23+ AATGGGAAGGGGCTCTGGATCGGACTAAATGTAGGCGCTTCAGTGCAATGTATACTGCTT
rJMSF016A23+ AATGGGAAGGGGCTCTGGATCGGACTAAATGTAGGCGCTTCAGTGCAATGTATACTGCTT
rJMSF044J10+ AATGGGAAGGGGCTCTGGATCGGACTAAATGTAGGCGCTTCAGTGCAATGTATACTGCTT
rJMSF018A23+ AATGGGAAGGGGCTCTGGATCGGACTAAATGTAGGCGCTTCAGTGCAATGTATACTGCTT
____________________________________________________________
consensus AATGGGAAGGGGCTCTGGATCGGACTAAATGTAGGCGCTTCAGTGCAATGTATACTGCTT
. : . : . : . : . : . :
rJMSF017A23+ GCACTTATAACTTGGTTCACTGATTGGCAAAAACAGGCAGCAAGAGCTAGGGAAAGGATC
rJMSF016A23+ GCACTTATAACTTGGTTCACTGATTGGCAAAAACAGGCAGCAAGAGCTAGGGAAAGGATC
rJMSF044J10+ GCACTTATAACTTGGTTCACTGATTGGCAAAAACAGGCAGCAAGAGCTAGGGAAAGGATC
rJMSF018A23+ GCTNTNATAACTNGGNCCACNNATTGGCAAAAACAGGCCGCCAGAGNTAGGGAAAGGATC
____________________________________________________________
consensus GCACTTATAACTTGGTTCACTGATTGGCAAAAACAGGCAGCAAGAGCTAGGGAAAGGATC
. : . : . : . : . : . :
rJMSF017A23+ TTTCAGGGAAATTGAAA
rJMSF016A23+ TTTCAGGGAAATTGAAA
rJMSF044J10+ TTTCAGGGAAATTGAAA
rJMSF018A23+ TTTCAGGGAAANCGAAACTTCTAGCGTTTCCGAGCTTTAGGTGGCNTTTGNNTAGACATT
____________________________________________________________
consensus TTTCAGGGAAATTGAAACTTCTAGCGTTTCCGAGCTTTAGGTGGCNTTTGNNTAGACATT