Contig 011287:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015E24Sequence443021010ref|XP_004239345.1|7e-07PREDICTED: F-box/LRR-repeat protein At3g26922-like [Solanum lycopersicum]739011287 (3)ref|XP_009628123.1|1e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF051D20Sequence638011287 (3)751011287 (3)ref|XP_009628123.1|1e-04PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-                          GGGAATCCCTAGACTCTAGTTCAATACTCAGCCTTCGCCCTTCAG
                      ____________________________________________________________
consensus                            GGGAATCCCTAGACTCTAGTTCAATACTCAGCCTTCGCCCTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           CCCTGCGACTCATCTGTCTCTCTGTCTCTCTGTCTCTCTACCGCAATTCTCCACTCTCCA
                      ____________________________________________________________
consensus             CCCTGCGACTCATCTGTCTCTCTGTCTCTCTGTCTCTCTACCGCAATTCTCCACTCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           CTCAGCTCCACCGGCGGCCGGCCTTAGTTTTCTCCGTCTGGCGTCTGCTACTCTGATTCG
                      ____________________________________________________________
consensus             CTCAGCTCCACCGGCGGCCGGCCTTAGTTTTCTCCGTCTGGCGTCTGCTACTCTGATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           TTTCCCTTTGGCTTTCCTAATTCGCAAAGGCCCAGACCAAACATCAGAGGTCAGGGTTTC
                      ____________________________________________________________
consensus             TTTCCCTTTGGCTTTCCTAATTCGCAAAGGCCCAGACCAAACATCAGAGGTCAGGGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           TCTGCTTTTCCCCAATCTCTGTTTTCTTCCCAACTCTTAGCTTCCGAATGTCCTTTTTAT
                      ____________________________________________________________
consensus             TCTGCTTTTCCCCAATCTCTGTTTTCTTCCCAACTCTTAGCTTCCGAATGTCCTTTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           TTACGAAATATGGAATCTTGCAGTTGAACAATAGAATGATTTTAGGTTTCGATTTCGACC
                      ____________________________________________________________
consensus             TTACGAAATATGGAATCTTGCAGTTGAACAATAGAATGATTTTAGGTTTCGATTTCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           GACGCCTCATTGTTCTTTCAAATTAATGGCTCGGCGACTCAAAACCGTACGGGATGCAAG
rJMSF051D20+                                               CTCAAAACCGTACGGGATGCAAG
                      ____________________________________________________________
consensus             GACGCCTCATTGTTCTTTCAAATTAATGGCTCGGCGACTCAAAACCGTACGGGATGCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           TAGGGATTTAATAAGTGAGCTGCCCTTAGAGGTAAAGAACAGAATTTTGAGGTGTTTGCG
rJMSF051D20+          TAGGGATTTAATAAGTGAGCTGCCCTTAGAGGTAAAGAACAGAATTTTGAGGTGTTTGCG
                      ____________________________________________________________
consensus             TAGGGATTTAATAAGTGAGCTGCCCTTAGAGGTAAAGAACAGAATTTTGAGGTGTTTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           CATCTCCAGAGGCCGCCAGAACTGCTCTGCTCTCAAGGCAGTGGAATGATGTTTGGTTGC
rJMSF051D20+          CATCTCCAGAGGCCGCCAGAACTGCTCTGCTCTCAAGGCAGTGGAATGATGTTTGGTTGC
                      ____________________________________________________________
consensus             CATCTCCAGAGGCCGCCAGAACTGCTCTGCTCTCAAGGCAGTGGAATGATGTTTGGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051D20-           AGCATGGACGGCTTACGTTTGATTGG                                  
rJMSF051D20+          AGCATGGACGGCTTACGTTTGATTGGGAATTCTTGCAATGTGTCGAAGAGTGCTATGATG
                      ____________________________________________________________
consensus             AGCATGGACGGCTTACGTTTGATTGGGAATTCTTGCAATGTGTCGAAGAGTGCTATGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          AAGTTATAGTTCCGTGGGAAGGATGACCAAGAAGCTGCTTCAAGGCTTTTGGAGGATCCA
rJMSF015E24+                          GGAAGGATGACGAAGAAGCTGCTTCAAGGTTTTTGGAGGATCCA
                      ____________________________________________________________
consensus             AAGTTATAGTTCCGTGGGAAGGATGACGAAGAAGCTGCTTCAAGGTTTTTGGAGGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          GACGGTGGCTTTGTTATTCAGGAGCTGAAGATGCTTAACACAATCAAGATTGAATCATTC
rJMSF015E24+          AATGGTAGCTTTGTTATTCACGAGTTGAAGATGCTTAACACAATCAAGATTGAATCATTC
                      ____________________________________________________________
consensus             GATGGTGGCTTTGTTATTCAGGAGTTGAAGATGCTTAACACAATCAAGATTGAATCATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          AGTGAATTCCCACTCGCAATGCTTTTTATAAAAATGTTGCTCTCAAAATCCCCTGTGCTA
rJMSF015E24+          AGTGAATCCGCATTTGAAATGCTCTTTATGAAAGTGTTGCTCTCAAAATCCCCAGCGCTA
                      ____________________________________________________________
consensus             AGTGAATTCGCATTTGCAATGCTTTTTATGAAAGTGTTGCTCTCAAAATCCCCTGTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          AAGAGAGTTGTTATTGTGCAGTCTTGGCATAATATGAATGACTCCGAGGTGAGAAAAATC
rJMSF015E24+          GAGAGAGTTGTTATTGTGAAGTCTTGGGGTACAA------ATGCCCAGGCGAGAAAAATC
                      ____________________________________________________________
consensus             GAGAGAGTTGTTATTGTGCAGTCTTGGGGTACTATGAATGATTCCGAGGTGAGAAAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          CAAAGGAAGTTGGAATGCTTCCCTCGTGCATCTCCAAACGCACAAATTGTCTACGCGGGC
rJMSF015E24+          CAAAGGAAGTTGGAATGCTTCCCTCGTGCATCTCCAAACGCACAAATTGTCTGCACGGGC
                      ____________________________________________________________
consensus             CAAAGGAAGTTGGAATGCTTCCCTCGTGCATCTCCAAACGCACAAATTGTCTGCGCGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051D20+          AATTACTATGCG                                                
rJMSF015E24+          AATTACTATGCGTCTATGCGTGATGATTGGATGGATACCCATGGTTTTGTCCTTTCAAGA
                      ____________________________________________________________
consensus             AATTACTATGCGTCTATGCGTGATGATTGGATGGATACCCATGGTTTTGTCCTTTCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015E24+          ACTTAGTATGGTGAATCTCCCTGGGTTCTATTTGATTGCAGCTTAGAAATATTCAAAAAG
                      ____________________________________________________________
consensus             ACTTAGTATGGTGAATCTCCCTGGGTTCTATTTGATTGCAGCTTAGAAATATTCAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015E24+          GAGTTTTCCAGTCGATAACTTGAGAAGGTAACCTATTTATCAAATGATTAAGTTGCATGT
                      ____________________________________________________________
consensus             GAGTTTTCCAGTCGATAACTTGAGAAGGTAACCTATTTATCAAATGATTAAGTTGCATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015E24+          AGAACACAATGATCTCAAAACTGCAAGGGGAGAGCTGCTTGGAATTTCAAAGCTCTAGCT
                      ____________________________________________________________
consensus             AGAACACAATGATCTCAAAACTGCAAGGGGAGAGCTGCTTGGAATTTCAAAGCTCTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015E24+          ACATTTAACACATGTTCATGCTTTCTTTCTGCAATTGCATTCTGCCTGTGTTGTGGGGTG
                      ____________________________________________________________
consensus             ACATTTAACACATGTTCATGCTTTCTTTCTGCAATTGCATTCTGCCTGTGTTGTGGGGTG