Contig 011286:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015D10Sequence213000905 (3)ref|XP_010316635.1|8e-09PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11811011286 (3)ref|XP_009757564.1|7e-84PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [
JMSF022B13Sequence664000905 (3)ref|XP_009768622.1|1e-82PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11781011286 (3)ref|XP_009757564.1|1e-84PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [
JMSF040I03Sequence680000905 (3)ref|XP_009768622.1|2e-77PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11838011286 (3)ref|XP_009757564.1|1e-93PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [

Alignment

This contig is upended


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rJMSF040I03+                               AAAAAGCGTTTTGAAATCATCTTGGGGATTGCTCGGGGG
                      ____________________________________________________________
consensus                                  AAAAAGCGTTTTGAAATCATCTTGGGGATTGCTCGGGGG
 
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rJMSF040I03+          GTTGTTNGTATCTTCACCAAGATTCTAGGTTGAAAATTATTCACAGAGATTTAAAGGCCA
rJMSF022B13+                                                            TTAAAGGCCA
rJMSF015D10+                                                            TTAAAGGCCA
                      ____________________________________________________________
consensus             GTTGTTNGTATCTTCACCAAGATTCTAGGTTGAAAATTATTCACAGAGATTTAAAGGCCA
 
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rJMSF040I03+          GCAATGTTCTGTTAGATGCCTGCATGCAGCCGAAAATATCTGATTTCGGGATGGCCCGGA
rJMSF022B13+          GCAATGTTCTGTTAGATGCCTCCATGCAGCCGAAAATATCTGATTTCGGGATGGCCCGGA
rJMSF015D10+          GCCATGTTCTGTTAGATGCCTCCATGCAGCCGAAAATATCTGATTTCGGGATGGCCCGGA
                      ____________________________________________________________
consensus             GCAATGTTCTGTTAGATGCCTCCATGCAGCCGAAAATATCTGATTTCGGGATGGCCCGGA
 
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rJMSF040I03+          TTTTTGGAGGAGACCAAATGTACGCAAATACAAATCGAGTAGTCGGGACATATGGCTATA
rJMSF022B13+          TTTTTGGAGGAGACCAAATGTACGCAAATACAAATCGAGTAGTCGGGACATATGGCTATA
rJMSF015D10+          TTTTTGGAGGAGACCAAATGTACGCAAATACAAATCGAGTAGTCGGGACATATGGCTATA
                      ____________________________________________________________
consensus             TTTTTGGAGGAGACCAAATGTACGCAAATACAAATCGAGTAGTCGGGACATATGGCTATA
 
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rJMSF040I03+          TGTCTCCAGAATACGCAATGGAAGGTCACTTCTCAGTCAAGTCAGACGTTTTCAGCTTCG
rJMSF022B13+          TGTCTCCAGAATACGCAATGGAAGGTCACTTCTCAGTCAAGTCAGACGTTTTCAGCTTCG
rJMSF015D10+          TGTCTCCAGAATACGCAATGGAAGGTCACTTCTCAGTCAAGTCAGACGTTTTCAGCTTCG
                      ____________________________________________________________
consensus             TGTCTCCAGAATACGCAATGGAAGGTCACTTCTCAGTCAAGTCAGACGTTTTCAGCTTCG
 
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rJMSF040I03+          GTGTTATGTTGTTGGAAATCGTGAGCGGAAGGAAAAACAAGAACCAGTTCAATGAAAACT
rJMSF022B13+          GTGTTATGTTGTTGGAAATCGTGAGCGGAAGGAAAAACAAGAACCAGTTCAATGAAAACT
rJMSF015D10+          GTGTTATGTTGTTGGAAATCGTGAGCGGAAGGAAAAACAAGAACCAGTTCAATGAAAACT
                      ____________________________________________________________
consensus             GTGTTATGTTGTTGGAAATCGTGAGCGGAAGGAAAAACAAGAACCAGTTCAATGAAAACT
 
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rJMSF040I03+          CCCTGAATTTAATAGGAGATGTATGGGATTTCTGGAGTGAAGAAAAAGCATTGGAAATAG
rJMSF022B13+          CCCTGAATTTAATAGGAGATGTATGGGATTTCTGGAGTGAAGAAAAAGCATTGGAAATAG
rJMSF015D10+          CCCTGAATTTAATAGGAGATGTATGGGATTTCTGGAGTGAAGAAAAAGCATTGGAAATAG
                      ____________________________________________________________
consensus             CCCTGAATTTAATAGGAGATGTATGGGATTTCTGGAGTGAAGAAAAAGCATTGGAAATAG
 
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rJMSF040I03+          TGGATCCATCGTTAGCAGAGTCATATGATGGTGGAGAAGTTCTAAGGTGCATCCATGTCG
rJMSF022B13+          TGGATCCATCGTTAGCAGAGTCATATGATGGTGGAGAAGTTCTAAGGTGCATCCATGTCG
rJMSF015D10+          TGGATCCATCGTTAGCAGAGTCATATGATGGTGGAGAAGTTCTAAGGTGCATCCATGTCG
                      ____________________________________________________________
consensus             TGGATCCATCGTTAGCAGAGTCATATGATGGTGGAGAAGTTCTAAGGTGCATCCATGTCG
 
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rJMSF040I03+          GTCTGTTGTGCGTTCAAGCATTTCCAAATGACAGACCAACTATGTCAGAAGTGGTGTTCA
rJMSF022B13+          GTCTGTTGTGCGTTCAAGCATTTCCAAATGACAGACCAACTATGTCAGAAGTGGTGTTCA
rJMSF015D10+          GTCTGTTGTGCGTTCAAGCATTTCCAAATGACAGACCAACTATGTCAGAAGTGGTGTTCA
                      ____________________________________________________________
consensus             GTCTGTTGTGCGTTCAAGCATTTCCAAATGACAGACCAACTATGTCAGAAGTGGTGTTCA
 
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rJMSF040I03+          TGTTAAGTAATGAAACGAATCTCCCTCATCCTAATCCACCGGGATTTATATTCAAACATG
rJMSF022B13+          TGTTAAGTAATGAAACGAATCTCCCTCATCCTAATCCACCGGGATTTATATTCAAACATG
rJMSF015D10+          TGTTAAGTAATGAAACGAATCTCCCTCATCCTAATCCACCGGGATTTATATTCAAACATG
                      ____________________________________________________________
consensus             TGTTAAGTAATGAAACGAATCTCCCTCATCCTAATCCACCGGGATTTATATTCAAACATG
 
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rJMSF040I03+          GCAATACTGCTCAATGCTCATCCTCAATGAGTGCTGGAAATCAATCTGTCAATGAAGTGT
rJMSF022B13+          GCAATACTGCTCAATGCTCATCCTCAATGAGTGCTGGAAATCAATCTGTCAATGAAGTGT
rJMSF015D10+          GCAATACTGCTCAATGCTCATCCTCAATGAGTGCTGGAAATCAATCTGTCAATGAAGTGT
                      ____________________________________________________________
consensus             GCAATACTGCTCAATGCTCATCCTCAATGAGTGCTGGAAATCAATCTGTCAATGAAGTGT
 
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rJMSF040I03+          CAATTACCAACATGGAGGGTCGCTAAATGCTCAAATTGGTTCGTGTGTGGATAGTATTTG
rJMSF022B13+          CAATTACCAACATGGAGGGTCGCTAAATGCTCAAATTGGTTCGTGTGTGGATAGTATTTG
rJMSF015D10+          CAATTACCAACATGGAGGGTCGCTAAATGCTCAAATTGGTTCGTGTGTGGATAGTATTTG
                      ____________________________________________________________
consensus             CAATTACCAACATGGAGGGTCGCTAAATGCTCAAATTGGTTCGTGTGTGGATAGTATTTG
 
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rJMSF040I03+          GGCTGTGGTGTTGTATATGTAGTGCATATAAATAAGGTTATTATTAGTATTGGAAAATTG
rJMSF022B13+          GGCTGTGGTGTTGTATATGTAGTGCATATAAATAAGGTTATTATTAGTATTGGAAAATTG
rJMSF015D10+          GGCTGTGGTGTTGTATATGTAGTGCATATAAATAAGGTTATTATTAGTATTGGAAAATTG
                      ____________________________________________________________
consensus             GGCTGTGGTGTTGTATATGTAGTGCATATAAATAAGGTTATTATTAGTATTGGAAAATTG
 
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rJMSF040I03+          GGATTAGTGTAAATGCNGAAGCTTCAAATAAGTCATCATCTGAATTGCAC          
rJMSF022B13+          GGATTAGTGTAAATGCAGAAGCTTCAAATAAGTCATCATCTGAATTGCACTGGGAACTTT
rJMSF015D10+          GGATTAGTGTAAATGCAGAAGCTTCAAATAAGTCATCATCTGAATTGCACTGGGAACTTT
                      ____________________________________________________________
consensus             GGATTAGTGTAAATGCAGAAGCTTCAAATAAGTCATCATCTGAATTGCACTGGGAACTTT
 
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rJMSF022B13+          TGTTCATGGAGCTATATTTTTCATTAGAGATTACAGTACAAT                  
rJMSF015D10+          TGTTCATGGAGCTATATTTTTCATTAGAGATTACAGTACAATATGAAGATAATGTAAGGT
                      ____________________________________________________________
consensus             TGTTCATGGAGCTATATTTTTCATTAGAGATTACAGTACAATATGAAGATAATGTAAGGT