Contig 011284:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF015B12+                                                               CGAAGCT
                      ____________________________________________________________
consensus                                                                  CGAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+                                                                CTTCAA
rJMSF015B12+          TTGAATCCCATCATCTCTCCAAGCATGCTGTTACACAACTTGTTGAAGGAGATTCTTCAA
                      ____________________________________________________________
consensus             TTGAATCCCATCATCTCTCCAAGCATGCTGTTACACAACTTGTTGAAGGAGATTCTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          GGAACATTGTAGAAATGATCTGCAGAACCAGCTGGCCATCAAAGTCTGATAACAACAACA
rJMSF015B12+          GGAACATTGTAGAAATGATCTGCAGAACCAGCTGGCCATCAAAGTCTGATAACAACAACA
                      ____________________________________________________________
consensus             GGAACATTGTAGAAATGATCTGCAGAACCAGCTGGCCATCAAAGTCTGATAACAACAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          ATAACAACAAGGTTAGCAATGGGATTGAAAGGATCTTGAAAGTGCACAACATGCAGAGAA
rJMSF015B12+          ATAACAACAAGGTTAGCAATGGGATTGAAAGGATCTTGAAAGTGCACAACATGCAGAGAA
                      ____________________________________________________________
consensus             ATAACAACAAGGTTAGCAATGGGATTGAAAGGATCTTGAAAGTGCACAACATGCAGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          CACTAACACAGTTCGAAGAATACCGTGAAATGGTAAAGACCAAAGCCAACAAACTTGCCA
rJMSF015B12+          CACTAACACAGTTCTAAGAATACCGTGAAATGGTAAAGACCAAAGCCAACAAACTTGCCA
                      ____________________________________________________________
consensus             CACTAACACAGTTCTAAGAATACCGTGAAATGGTAAAGACCAAAGCCAACAAACTTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          AGAAACACGCCCGTTGCCTAGCTGACGGAAATGAGCTACTGAGATTCCATGGCACAACCC
rJMSF015B12+          AGAAACACGCCCGTTGCCTAGCTGACGGAAATGAGCTACTGAGATTCCATGGCACAACCC
                      ____________________________________________________________
consensus             AGAAACACGCCCGTTGCCTAGCTGACGGAAATGAGCTACTGAGATTCCATGGCACAACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          TGGAATGCTGTTTAGGCATGAAACACTGCTCAGGCCTATGCACCTCACACAAATGTGGTG
rJMSF015B12+          TGGAATGCTGTTTAGGCATGAAACACTGCTCAGGCCTATGCACCTCACACAAATGTGGTG
                      ____________________________________________________________
consensus             TGGAATGCTGTTTAGGCATGAAACACTGCTCAGGCCTATGCACCTCACACAAATGTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          TTTGCCAGATTTTGACACATGGGTTCAAAATCAACGGCGGGATCGGAGTTTTCACAGCTT
rJMSF015B12+          TTTGCCAGATTTTGACACATGGGTTCAAAATCAACGGCGGGATCGGAGTTTTCACAGCTT
                      ____________________________________________________________
consensus             TTTGCCAGATTTTGACACATGGGTTCAAAATCAACGGCGGGATCGGAGTTTTCACAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          CCACAAGTAGCAGAGCACTTGAAGCCATCAAATTGAAGGATGTCAGGAATCCAGGCCTGA
rJMSF015B12+          CCACAAGTAGCAGAGCACTTGAAGCCATCAAATTGAAGGATGTCAGGAATCCAGGCCTGA
                      ____________________________________________________________
consensus             CCACAAGTAGCAGAGCACTTGAAGCCATCAAATTGAAGGATGTCAGGAATCCAGGCCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          GGAAGGCTCTCATAGTGTGCAGAGTGATAGCAGGCAGGGTGCATAAACCACTGGAGAATG
rJMSF015B12+          GGAAGGCTCTCATAGTGTGCAGAGTGATAGCAGGCAGGGTGCATAAACCACTGGAGAATG
                      ____________________________________________________________
consensus             GGAAGGCTCTCATAGTGTGCAGAGTGATAGCAGGCAGGGTGCATAAACCACTGGAGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          TTGAAGAAATTGCTGGCCAATCAGGTTTTGACTCTTTAGCTGGTAAAGTAGGCTTGAACT
rJMSF015B12+          TTGAAGAAATTGCTGGCCAATCAGGTTTTGACTCTTTAGCTGGTAAAGTAGGCTTGAACT
                      ____________________________________________________________
consensus             TTGAAGAAATTGCTGGCCAATCAGGTTTTGACTCTTTAGCTGGTAAAGTAGGCTTGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          CTAGTATTGAAGAACTCTTTTTACTCAGCCACAAAGCTTTGCTTCCTTGCTTCGTTGTCA
rJMSF015B12+          CTAGTATTGAAGAACTCTTTTTACTCAGCCACAAAGCTTTGCTTCCTTGCTTCGTTGTCA
                      ____________________________________________________________
consensus             CTAGTATTGAAGAACTCTTTTTACTCAGCCACAAAGCTTTGCTTCCTTGCTTCGTTGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          TCTGCAAACCATAAAACAGTTTCGGAAGTCCAATTTGATTGTAATTTCTCAGGAACACTG
rJMSF015B12+          TCTGCAAACCATAAAACAGTTTCGGAAGTCCAATTTGATTGTAATTTCTCAGGAACACTG
                      ____________________________________________________________
consensus             TCTGCAAACCATAAAACAGTTTCGGAAGTCCAATTTGATTGTAATTTCTCAGGAACACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033J09+          GTCAATTTTTCATTTTTCCTT                                       
rJMSF015B12+          GTCAATTTTTCATTTTTCCTTTATCTTTATAATAATATAATAAGACCAATATACCGTAAG
                      ____________________________________________________________
consensus             GTCAATTTTTCATTTTTCCTTTATCTTTATAATAATATAATAAGACCAATATACCGTAAG