Contig 011273:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042M14Sequence654011612 (5)ref|XP_009615237.1|1e-77PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]585011273 (10)gb|KDO68426.1|4e-56hypothetical protein CISIN_1g010906mg [Citrus sinensis]
JMSF004M06Sequence104011273 (10)
JMSF007I12Sequence292006395 (6)756011273 (10)ref|XP_009790347.1|2e-84PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF012F23Sequence463006395 (6)824011273 (10)ref|XP_009790347.1|3e-76PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF017H16Sequence582006395 (6)813011273 (10)ref|XP_009790347.1|2e-88PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF028M21Sequence590006395 (6)716011273 (10)ref|XP_009790347.1|6e-78PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF029O19Sequence536006395 (6)718011273 (10)ref|XP_009790347.1|2e-77PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF036A14Sequence703011612 (5)ref|XP_009615237.1|6e-91PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]716011273 (10)ref|XP_009615237.1|2e-79PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF040P16Sequence621011612 (5)ref|XP_009615237.1|1e-82PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]839011273 (10)ref|XP_009615237.1|3e-85PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF041H08Sequence792011612 (5)ref|XP_009615237.1|1e-99PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]812011273 (10)ref|XP_009615237.1|4e-93PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040P16+ TGCCTGAAATCACCACTTCTTCCTGCATATTTGGCTGC
                      ____________________________________________________________
consensus TGCCTGAAATCACCACTTCTTCCTGCATATTTGGCTGC
 
. : . : . : . : . : . :
rJMSF007I12+ CCTCAGGATCTCTTGNT
rJMSF017H16+ GTTCCTCCCTCAGGATCTCTTGGT
rJMSF040P16+ TGCTTTCTGCAAAAANTAAGCAGGCTTTCACTTTCCGTTCCTCCCTCAGGATCTCTTGTT
rJMSF041H08+ GTTCCTCCCTCAGGATCTCTTGTT
                      ____________________________________________________________
consensus TGCTTTCTGCAAAAANTAAGCAGGCTTTCACTTTCCGTTCCTCCCTCAGGATCTCTTGTT
 
. : . : . : . : . : . :
rJMSF029O19+ TTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF007I12+ ATTACTGCTTTAATCCACANCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF028M21+ TTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF017H16+ ATTACTGCTTTAATCCACANCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF040P16+ ATTACTGCTTTAATCCACAACCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF036A14+ AAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF041H08+ ATTACTGCTTTAATCCACACCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF012F23+ TTTAAGGAGACATCCATCCATAANCTGCTTAGTACAT
                      ____________________________________________________________
consensus ATTACTGCTTTAATCCACACCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
 
. : . : . : . : . : . :
rJMSF029O19+ CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF007I12+ CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF028M21+ CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF017H16+ CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF040P16+ CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF036A14+ CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF041H08+ CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF012F23+ CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
                      ____________________________________________________________
consensus CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
 
. : . : . : . : . : . :
rJMSF029O19+ ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF007I12+ ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF028M21+ ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF017H16+ ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF040P16+ ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF036A14+ ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF041H08+ ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF012F23+ ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
                      ____________________________________________________________
consensus ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
 
. : . : . : . : . : . :
rJMSF029O19+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF007I12+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF028M21+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF017H16+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF040P16+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMSF036A14+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMSF041H08+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMFF042M14+ GAGGGCTAATGCCATGGGGAGCTCTCTTTGGGAGATTGATACT
rJMSF012F23+ GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
                      ____________________________________________________________
consensus GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
 
. : . : . : . : . : . :
rJMSF029O19+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF007I12+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF028M21+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF017H16+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF040P16+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF036A14+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF041H08+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMFF042M14+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF012F23+ CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
                      ____________________________________________________________
consensus CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
 
. : . : . : . : . : . :
rJMSF029O19+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF007I12+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF028M21+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF017H16+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF040P16+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF036A14+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF041H08+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMFF042M14+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF012F23+ ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
                      ____________________________________________________________
consensus ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
 
. : . : . : . : . : . :
rJMSF029O19+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF007I12+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF028M21+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF017H16+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF040P16+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF036A14+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF041H08+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMFF042M14+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF012F23+ ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
                      ____________________________________________________________
consensus ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
 
. : . : . : . : . : . :
rJMSF029O19+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF007I12+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF028M21+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF017H16+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF040P16+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF036A14+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF041H08+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMFF042M14+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF012F23+ GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
                      ____________________________________________________________
consensus GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
 
. : . : . : . : . : . :
rJMSF029O19+ AACAAAAAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF007I12+ AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF028M21+ AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF017H16+ AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF040P16+ AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF036A14+ AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF041H08+ AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMFF042M14+ AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF012F23+ AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
                      ____________________________________________________________
consensus AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
 
. : . : . : . : . : . :
rJMSF029O19+ CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF007I12+ CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF028M21+ CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF017H16+ CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF040P16+ CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF036A14+ CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF041H08+ CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMFF042M14+ CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF012F23+ CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
                      ____________________________________________________________
consensus CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
 
. : . : . : . : . : . :
rJMSF029O19+ ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF007I12+ ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF028M21+ ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF017H16+ ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF040P16+ ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF036A14+ ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF041H08+ ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMFF042M14+ ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF012F23+ ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
                      ____________________________________________________________
consensus ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
 
. : . : . : . : . : . :
rJMSF029O19+ CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF007I12+ CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF028M21+ CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF017H16+ CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF040P16+ CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF036A14+ CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF041H08+ CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMFF042M14+ CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF004M06+ ACTGGAGANTGACCCC
rJMSF012F23+ CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
                      ____________________________________________________________
consensus CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
 
. : . : . : . : . : . :
rJMSF029O19+ TT
rJMSF007I12+ TT
rJMSF028M21+ TTT
rJMSF017H16+ TTT
rJMSF040P16+ TTTTAAGGCCCAGTAACCAAAAT
rJMSF036A14+ TTTTAAGGCCCAGTAACCAAAAT
rJMSF041H08+ TTTTAAGGCCCAGTAACCAAAATTA
rJMFF042M14+ TTTTAAGGCCCAGTAACCAAAATTA
rJMSF004M06+ TTTCAAGACCCAGTNACCANCATTAATTACAGGACCGAAAGTACTGNTTTTGTGCAATTC
rJMSF012F23+ TTTCAAGACCCAGTAACCAAAATTAATTACAGGACCGAAAGTACTGTTTTTGTGCAATTT
                      ____________________________________________________________
consensus TTTTAAGGCCCAGTAACCAAAATTAATTACAGGACCGAAAGTACTGTTTTTGTGCAATTT
 
. : . : . : . : . : . :
rJMSF004M06+ GGTGACAACTTGNCTTNGGTGGTGGCA
rJMSF012F23+ GGTGACAACTTGACTTTGGTGGTGGCATGGCTGCTGGCTCAAAACGTGGCCAAAATGTTG
                      ____________________________________________________________
consensus GGTGACAACTTGACTTTGGTGGTGGCATGGCTGCTGGCTCAAAACGTGGCCAAAATGTTG