Contig 011273:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042M14Sequence654011612 (5)ref|XP_009615237.1|1e-77PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]585011273 (10)gb|KDO68426.1|4e-56hypothetical protein CISIN_1g010906mg [Citrus sinensis]
JMSF004M06Sequence104011273 (10)
JMSF007I12Sequence292006395 (6)756011273 (10)ref|XP_009790347.1|2e-84PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF012F23Sequence463006395 (6)824011273 (10)ref|XP_009790347.1|3e-76PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF017H16Sequence582006395 (6)813011273 (10)ref|XP_009790347.1|2e-88PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF028M21Sequence590006395 (6)716011273 (10)ref|XP_009790347.1|6e-78PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF029O19Sequence536006395 (6)718011273 (10)ref|XP_009790347.1|2e-77PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF036A14Sequence703011612 (5)ref|XP_009615237.1|6e-91PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]716011273 (10)ref|XP_009615237.1|2e-79PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF040P16Sequence621011612 (5)ref|XP_009615237.1|1e-82PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]839011273 (10)ref|XP_009615237.1|3e-85PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]
JMSF041H08Sequence792011612 (5)ref|XP_009615237.1|1e-99PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]812011273 (10)ref|XP_009615237.1|4e-93PREDICTED: nucleolar complex protein 4 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF040P16+                                TGCCTGAAATCACCACTTCTTCCTGCATATTTGGCTGC
                      ____________________________________________________________
consensus                                   TGCCTGAAATCACCACTTCTTCCTGCATATTTGGCTGC
 
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rJMSF007I12+                                                     CCTCAGGATCTCTTGNT
rJMSF017H16+                                              GTTCCTCCCTCAGGATCTCTTGGT
rJMSF040P16+          TGCTTTCTGCAAAAANTAAGCAGGCTTTCACTTTCCGTTCCTCCCTCAGGATCTCTTGTT
rJMSF041H08+                                              GTTCCTCCCTCAGGATCTCTTGTT
                      ____________________________________________________________
consensus             TGCTTTCTGCAAAAANTAAGCAGGCTTTCACTTTCCGTTCCTCCCTCAGGATCTCTTGTT
 
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rJMSF029O19+                                 TTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF007I12+          ATTACTGCTTTAATCCACANCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF028M21+                                  TTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF017H16+          ATTACTGCTTTAATCCACANCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF040P16+          ATTACTGCTTTAATCCACAACCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF036A14+                                    AAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF041H08+          ATTACTGCTTTAATCCACACCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
rJMSF012F23+                                 TTTAAGGAGACATCCATCCATAANCTGCTTAGTACAT
                      ____________________________________________________________
consensus             ATTACTGCTTTAATCCACACCCTTTTAAGGAGACATCCATCAATAAACTGCTTAGTACAT
 
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rJMSF029O19+          CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF007I12+          CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF028M21+          CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF017H16+          CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF040P16+          CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF036A14+          CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF041H08+          CAGGATGATACTGATGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
rJMSF012F23+          CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
                      ____________________________________________________________
consensus             CAGGACGATACTGGTGAGACAACTAAAGAAAATTCAGAAGCAGAGAGAGAGACTGATGTT
 
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rJMSF029O19+          ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF007I12+          ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF028M21+          ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF017H16+          ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF040P16+          ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF036A14+          ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF041H08+          ACCGCAGATGCTTGCAGAGAAGTCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
rJMSF012F23+          ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
                      ____________________________________________________________
consensus             ACTGCTGATGCTAGCAGAGAAATCTCTGTTAATGGATTGGGCATTGATCCTTTTGATGAG
 
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rJMSF029O19+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF007I12+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF028M21+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF017H16+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
rJMSF040P16+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMSF036A14+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMSF041H08+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGGAGCTCTCTTTGGGAGATTGATACT
rJMFF042M14+                           GAGGGCTAATGCCATGGGGAGCTCTCTTTGGGAGATTGATACT
rJMSF012F23+          GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
                      ____________________________________________________________
consensus             GAAGAGAGGGATCCTTTGAGGGCTAATGCCATGAGTAGCTCTCTTTGGGAGATTGATACT
 
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rJMSF029O19+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF007I12+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF028M21+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF017H16+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF040P16+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF036A14+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF041H08+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMFF042M14+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
rJMSF012F23+          CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
                      ____________________________________________________________
consensus             CTTCGTCATCACTACTGTCCTCCTGTTTCAAGATTTGTTTTATCGCTTGAAAATGATTTA
 
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rJMSF029O19+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF007I12+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF028M21+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF017H16+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF040P16+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF036A14+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF041H08+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMFF042M14+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
rJMSF012F23+          ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
                      ____________________________________________________________
consensus             ACCGTCAGAGCAAAAACCACTGAAATAGCAGTAAAAGATTTCAGTTCTGGTTCTTATGCA
 
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rJMSF029O19+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF007I12+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF028M21+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF017H16+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
rJMSF040P16+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF036A14+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF041H08+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMFF042M14+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTTCCCCTGGCATTCTACAAA
rJMSF012F23+          ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
                      ____________________________________________________________
consensus             ACAATTTTTGGTGATGAGATTAGGAGAAGGGTTAAACAAGTCCCCCTGGCATTCTACAAA
 
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rJMSF029O19+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF007I12+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF028M21+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF017H16+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF040P16+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF036A14+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF041H08+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMFF042M14+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
rJMSF012F23+          GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
                      ____________________________________________________________
consensus             GTACCACCAACCTCTTTGTTCTCAGAGTCCGATTTTCCTGGCTGGACTTTCGATATCGAA
 
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rJMSF029O19+          AACAAAAAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF007I12+          AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF028M21+          AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF017H16+          AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
rJMSF040P16+          AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF036A14+          AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF041H08+          AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMFF042M14+          AACAAAGAGTTAGCTGGTGTTAATGAAGAGA---ACGATGTTATTTCTGCGAAACGGCAG
rJMSF012F23+          AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
                      ____________________________________________________________
consensus             AACAAAGAGTTAGCTGGTGTTAATCAAGAGAGCGATGATGTTATTTCTGCGAAACGGCAG
 
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rJMSF029O19+          CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF007I12+          CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF028M21+          CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF017H16+          CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF040P16+          CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF036A14+          CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF041H08+          CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMFF042M14+          CGAGTTGAGTGCTCTTAATGTGATTGTTGTATTTGTAGAAGTAAAATTTTGATATTCAAA
rJMSF012F23+          CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
                      ____________________________________________________________
consensus             CGAGTTGAGTGCTCTTAATGTGATTGTTCTATTTGTAGAAGTAAAATTTTGATATTCAAA
 
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rJMSF029O19+          ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF007I12+          ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF028M21+          ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF017H16+          ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
rJMSF040P16+          ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF036A14+          ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF041H08+          ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMFF042M14+          ATTATACCTAAGTACCTAGTTTGGTTTTCCGTTAGTTTTGGTAGTCATTTGTATTGAGCT
rJMSF012F23+          ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
                      ____________________________________________________________
consensus             ATTATACCTAAGTACCTAGTTTTGTTTTCCTTCAGTTTTGGTAGTCATTTGTGTTGAGCT
 
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rJMSF029O19+          CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF007I12+          CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF028M21+          CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF017H16+          CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF040P16+          CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF036A14+          CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF041H08+          CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMFF042M14+          CAATTACATTAGCTACTTTGCTAGCTTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
rJMSF004M06+                                                      ACTGGAGANTGACCCC
rJMSF012F23+          CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
                      ____________________________________________________________
consensus             CAATTACATTAGCTACTTAGCTAGCGTTAAAACTCATCTGAGAGACTGGAGATTGACCCC
 
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rJMSF029O19+          TT                                                          
rJMSF007I12+          TT                                                          
rJMSF028M21+          TTT                                                         
rJMSF017H16+          TTT                                                         
rJMSF040P16+          TTTTAAGGCCCAGTAACCAAAAT                                     
rJMSF036A14+          TTTTAAGGCCCAGTAACCAAAAT                                     
rJMSF041H08+          TTTTAAGGCCCAGTAACCAAAATTA                                   
rJMFF042M14+          TTTTAAGGCCCAGTAACCAAAATTA                                   
rJMSF004M06+          TTTCAAGACCCAGTNACCANCATTAATTACAGGACCGAAAGTACTGNTTTTGTGCAATTC
rJMSF012F23+          TTTCAAGACCCAGTAACCAAAATTAATTACAGGACCGAAAGTACTGTTTTTGTGCAATTT
                      ____________________________________________________________
consensus             TTTTAAGGCCCAGTAACCAAAATTAATTACAGGACCGAAAGTACTGTTTTTGTGCAATTT
 
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rJMSF004M06+          GGTGACAACTTGNCTTNGGTGGTGGCA                                 
rJMSF012F23+          GGTGACAACTTGACTTTGGTGGTGGCATGGCTGCTGGCTCAAAACGTGGCCAAAATGTTG
                      ____________________________________________________________
consensus             GGTGACAACTTGACTTTGGTGGTGGCATGGCTGCTGGCTCAAAACGTGGCCAAAATGTTG