Contig 011272:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012B15Sequence343011272 (3)gb|AGZ15402.1|7e-51ubiquitin conjugating enzyme/ubiquitin-like activating enzyme [Phaseolus vulgar735011272 (3)ref|XP_006575294.1|2e-63PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like [Glycine max]
JMSF020K11Sequence686006084 (5)ref|XP_009603996.1|3e-108PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]700011272 (3)emb|CDP06865.1|9e-88unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF020K11+                                 GCCCGTCGAGTGGGTCTCCTTGCTGCTGCGGTTTCTC
                      ____________________________________________________________
consensus                                    GCCCGTCGAGTGGGTCTCCTTGCTGCTGCGGTTTCTC
 
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JMSF012B15-                                                          AATGACGCTCGGT
rJMSF020K11+          GGAAACATTAAGGTCTGATCTTTACGGCTTTAATCTCTCTAACCGGAAATGACGCTCGGT
rJMSF012B15+                                                         AATGACGCTCGGT
                      ____________________________________________________________
consensus             GGAAACATTAAGGTCTGATCTTTACGGCTTTAATCTCTCTAACCGGAAATGACGCTCGGT
 
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JMSF012B15-           GCCGGAGGATCTAGCGTAGTCGTTCCTAGGAATTTTAGGTTGCTCGAGGAGCTTGAACGT
rJMSF020K11+          GCCGGAGGATCTAGCGTAGTCGTTCCTAGGAATTTTAGGTTGCTCGAGGAGCTTGAACGT
rJMSF012B15+          GCCGGAGGATCTAGCGTAGTCGTTCCTAGGAATTTTAGGTTGCTCGAGGAGCTTGAACGT
                      ____________________________________________________________
consensus             GCCGGAGGATCTAGCGTAGTCGTTCCTAGGAATTTTAGGTTGCTCGAGGAGCTTGAACGT
 
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JMSF012B15-           GGAGAGAAAGGTATTGGAGACGGGTCTGTTAGCTATGGAATGGATGATGCTGATGATCTT
rJMSF020K11+          GGAGAGAAAGGTATTGGAGACGGGTCTGTTAGCTATGGAATGGATGATGCTGATGATCTT
rJMSF012B15+          GGAGAGAAAGGTATTGGAGACGGGTCTGTTAGCTATGGAATGGATGATGCTGATGATCTT
                      ____________________________________________________________
consensus             GGAGAGAAAGGTATTGGAGACGGGTCTGTTAGCTATGGAATGGATGATGCTGATGATCTT
 
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JMSF012B15-           TACATGCGTTCTTGGACGGGTACCATAATTGGTCCGCACAATACTGTACATGAGGGCCGT
rJMSF020K11+          TACATGCGTTCTTGGACGGGTACCATAATTGGTCCGCACAATACTGTACATGAGGGCCGT
rJMSF012B15+          TACATGCGTTCTTGGACGGGTACCATAATTGGTCCGCACAATACTGTACATGAGGGCCGT
                      ____________________________________________________________
consensus             TACATGCGTTCTTGGACGGGTACCATAATTGGTCCGCACAATACTGTACATGAGGGCCGT
 
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JMSF012B15-           ATTTATCAATTGAAGCTGTTTTGTGACAAAGATTATCCAGATAAGCCTCC          
rJMSF020K11+          ATTTATCAATTGAAGCTGTTTTGTGACAAAGATTATCCAGATAAGCCTCCGAGTGTTCGT
rJMSF012B15+          ATTTATCAATTGAAGCTGTTTTGTGACAAAGATTATCCAGATAAGCCTCCGAGTGTTCGT
                      ____________________________________________________________
consensus             ATTTATCAATTGAAGCTGTTTTGTGACAAAGATTATCCAGATAAGCCTCCGAGTGTTCGT
 
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rJMSF020K11+          TTCCATTCGTGCATCCACATGACCTGTGTCAACCCCGAGACTGGAGTGGTTGAACCAAAG
rJMSF012B15+          TTCCATTCGTGCATCCACATGACCTGTGTCAACCCCGAGACT--AGTGGTTGAACCAAAG
                      ____________________________________________________________
consensus             TTCCATTCGTGCATCCACATGACCTGTGTCAACCCCGAGACTGGAGTGGTTGAACCAAAG
 
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rJMSF020K11+          AAGTTCAGTATGCTGTCAAATTGGCAGCGGGAGTACACGATGGAAGACATCCTGACTCAG
rJMSF012B15+          AAGTTCAGTATGCTGTCAAATTGGCAGCGGGAGTACACGATGGAAGACATCCTGACTCAG
                      ____________________________________________________________
consensus             AAGTTCAGTATGCTGTCAAATTGGCAGCGGGAGTACACGATGGAAGACATCCTGACTCAG
 
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rJMSF020K11+          CTGCGAAAAGAAATGGCTGCATCTTACAACCGAAAGCTCGCTCAACCCCCAGAAGGTACC
rJMSF012B15+          CTGCGAAAAGAAATGGCTGCATCTTACAACCGAAAGCTCGCTCAACCCCCAGAAGGTACC
                      ____________________________________________________________
consensus             CTGCGAAAAGAAATGGCTGCATCTTACAACCGAAAGCTCGCTCAACCCCCAGAAGGTACC
 
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rJMSF020K11+          TTTTTCTGATACCCTAAGCTGCAAG                                   
rJMSF012B15+          TTTTTCTGATACCCTAAGCTGCAAGGAGGACCTATTATCAGATATTGCTGGATATGCTGA
                      ____________________________________________________________
consensus             TTTTTCTGATACCCTAAGCTGCAAGGAGGACCTATTATCAGATATTGCTGGATATGCTGA
 
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rJMSF012B15+          CTGTATTTCTGAAATGTCCATAAATAGTTGCAAATTTATGTCGTAATGAATGTTACTACA
                      ____________________________________________________________
consensus             CTGTATTTCTGAAATGTCCATAAATAGTTGCAAATTTATGTCGTAATGAATGTTACTACA
 
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rJMSF012B15+          CCAATATACATACCCCGCAAACCTTGCAATATCTTTCTTTCCATATGCATCATGCTTGTT
                      ____________________________________________________________
consensus             CCAATATACATACCCCGCAAACCTTGCAATATCTTTCTTTCCATATGCATCATGCTTGTT
 
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rJMSF012B15+          CTGTGTTGTTCTAATTCCCCTTTGGATTAATGGATTCAGTGTTAAAGGAGAGATTGCCAT
                      ____________________________________________________________
consensus             CTGTGTTGTTCTAATTCCCCTTTGGATTAATGGATTCAGTGTTAAAGGAGAGATTGCCAT