Contig 011270:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011M06Sequence408009536 (4)ref|XP_009785266.1|79.3PREDICTED: uncharacterized protein LOC104233553 [Nicotiana sylvestris]779011270 (4)ref|XP_009785266.1|293PREDICTED: uncharacterized protein LOC104233553 [Nicotiana sylvestris]
JMSF033E02Sequence724009536 (4)ref|XP_009785266.1|219PREDICTED: uncharacterized protein LOC104233553 [Nicotiana sylvestris]666011270 (4)ref|XP_009595166.1|261PREDICTED: uncharacterized protein LOC104091513 [Nicotiana tomentosiformis]
JMSF043A17Sequence684009536 (4)ref|XP_009785266.1|276PREDICTED: uncharacterized protein LOC104233553 [Nicotiana sylvestris]648011270 (4)ref|XP_009595166.1|197PREDICTED: uncharacterized protein LOC104091513 [Nicotiana tomentosiformis]
JMSF046G03Sequence764009536 (4)ref|XP_009595166.1|237PREDICTED: uncharacterized protein LOC104091513 [Nicotiana tomentosiformis]736011270 (4)ref|XP_009595166.1|288PREDICTED: uncharacterized protein LOC104091513 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011M06+                                                                    CA
                      ____________________________________________________________
consensus                                                                       CA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+                      GGAGAAGCAGTACCTGATTATTACGTTCAATTATTCAATGCTTNGTGG
rJMSF011M06+          GANGACATCAGGGGAGAAGCAGTACCTGATTATTACGTTCAATTATTCAATGCTTNGTGG
                      ____________________________________________________________
consensus             GANGACATCAGGGGAGAAGCAGTACCTGATTATTACGTTCAATTATTCAATGCTTNGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GGAGCATGTGGGACATCCACCAGTACTGGGCGAGAGACCTTCGTGTTGAAAGGAGGCAAA
rJMSF033E02+                              CAGTACTGGGCGAGAGACNTTCGTGTTGAAAGGAGGCAAA
rJMSF043A17+                                                                   AAA
rJMSF011M06+          GAAGCATGTGGGACATCCACCAGTACTGGGCGAGAGACCTTCGTGTTGAAAGGAGGCAAA
                      ____________________________________________________________
consensus             GGAGCATGTGGGACATCCACCAGTACTGGGCGAGAGACCTTCGTGTTGAAAGGAGGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GGTGTTGCTGCAATAAGCGGAACCCGGT-CAGTGAAACTTCTGGAAATTCCAGCAGCATC
rJMSF033E02+          GGTGTTGCTGCAATAAGCGGAACCCGGT-CAGTGAAACTTCTGGAAATTCCAGCAGCATC
rJMSF043A17+          GGTGTTGCTGCAATAAGCGGAACCCGGTCCAGTGAAACTTCTGGAAATTCCAGCAGCATC
rJMSF011M06+          GGTGTTGCTGCAATAAGCGGAACCCGGT-CAGTGAAACTTCTGGAAATTCCAGCAGCATC
                      ____________________________________________________________
consensus             GGTGTTGCTGCAATAAGCGGAACCCGGT-CAGTGAAACTTCTGGAAATTCCAGCAGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          TCTGATCCAATCTGTTGAACGATGTTTAGCACCCTTTGTTGTCTGTGTAACCGGTGAGCT
rJMSF033E02+          TCTGATCCAATCTGTTGAACGATGTTTAGCACCCTTTGTTGTCTGTGTAACCGGTGAGCT
rJMSF043A17+          TCTGATCCAATCTG-TGAACGATGTTTAGCACCCTTTGTTGTCTGTGTAACCGGTGAGCT
rJMSF011M06+          TCTGATCCAATCTGTTGAACGATGTTTAGCACCCTTTGTTGTCTGTGTAACCGGTGAGCT
                      ____________________________________________________________
consensus             TCTGATCCAATCTGTTGAACGATGTTTAGCACCCTTTGTTGTCTGTGTAACCGGTGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          TCTTATTAACATCGTGAAAGGCGGGGGAGTTATCAGGGACATTGTCTGGGGGGATACCTC
rJMSF033E02+          TCTTATTAACATCGTGAAAGGCGGGGGAGTTATCAGGGACATTGTCTGGGGGGATACCTC
rJMSF043A17+          TCTTATTAACATCGTGAAAGGCGGGGGAGTTATCAGGGACATTGTCTGGGGGGATACCTC
rJMSF011M06+          TCTTATTAACATCGTGAAAGGCGGGGGAGTTATCAGGGACATTGTCTGGGGGGATACCTC
                      ____________________________________________________________
consensus             TCTTATTAACATCGTGAAAGGCGGGGGAGTTATCAGGGACATTGTCTGGGGGGATACCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          TCCAGACTCCTCCATTGATGATGTCTCGACACAAGAAACAAGTGTCGTTGGAGGGCCTCT
rJMSF033E02+          TCCAGACTCCTCCATTGATGATGTCTCGACACAAGAAACAAGTGTCGTTGGAGGGCCTCT
rJMSF043A17+          TCCAGACTCCTCCATTGATGATGTCTCGACACAAGAAACAAGTGTCGTTGGAGGGCCTCT
rJMSF011M06+          TCCAGACTCCTCCATTGATGATGTCTCGACACAAGAAACAAGTGTCGTTGGAGGGCCTCT
                      ____________________________________________________________
consensus             TCCAGACTCCTCCATTGATGATGTCTCGACACAAGAAACAAGTGTCGTTGGAGGGCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          TTATCTCAAATACCTGGACGATGAAGACGATAGAGGAGGTAATGCTCAATTTACTAAGAA
rJMSF033E02+          TTATCTCAAATACCTGGACGATGAAGACGATAGAGGAGGTAATGCTCAATTTACTAAGAA
rJMSF043A17+          TTATCTCAAATACCTGGACGATGAAGACGATAGAGGAGGTAATGCTCAATTTACTAAGAA
rJMSF011M06+          TTATCTCAAATACCTGGACGATGAAGACGATAGAGGAGGTAATGCTCAATTTACTAAGAA
                      ____________________________________________________________
consensus             TTATCTCAAATACCTGGACGATGAAGACGATAGAGGAGGTAATGCTCAATTTACTAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GAACATGGGATGCTTTCAGATTCTGATATTCCTGCCACCAAGATTCCATCTCCTCTTCCA
rJMSF033E02+          GAACATGGGATGCTTTCAGATTCTGATATTCCTGCCACCAAGATTCCATCTCCTCTTCCA
rJMSF043A17+          GAACATGGGATGCTTTCAGATTCTGATATTCCTGCCACCAAGATTCCATCTCCTCTTCCA
rJMSF011M06+          GAACATGGGATGCTTTCAGATTCTGATATTCCTGCCACCAAGATTCCATCTCCTCTTCCA
                      ____________________________________________________________
consensus             GAACATGGGATGCTTTCAGATTCTGATATTCCTGCCACCAAGATTCCATCTCCTCTTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          AATGGAAGTTTGTGATACCTCTTCTCTTGTCCGGATTAGAACTGATCACTGGCCATGCTT
rJMSF033E02+          AATGGAAGTTTGTGATACCTCTTCTCTTGTCCGGATTAGAACTGATCACTGGCCATGCTT
rJMSF043A17+          AATGGAAGTTTGTGATACCTCTTCTCTTGTCCGGATTAGAACTGATCACTGGCCATGCTT
rJMSF011M06+          AATGGAAGTTTGTGATACCTCTTCTCTTGTCCGGATTAGAACTGATCACTGGCCATGCTT
                      ____________________________________________________________
consensus             AATGGAAGTTTGTGATACCTCTTCTCTTGTCCGGATTAGAACTGATCACTGGCCATGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GGCTTACATTGATGACTATTTGGAAGCTTTATTTTGTCTATAGCATATCTTTCTACCCTC
rJMSF033E02+          GGCTTACATTGATGACTATTTGGAAGCTTTATTTTGTCTATAGCATATCTTTCTACCCTC
rJMSF043A17+          GGCTTACATTGATGACTATTTGGAAGCTTTATTTTGTCTATAGCATATCTTTCTACCCTC
rJMSF011M06+          GGCTTACATTGATGACTATTTGGAAGCTTTATTTTGTCTATAGCATATCTTTCTACCCTC
                      ____________________________________________________________
consensus             GGCTTACATTGATGACTATTTGGAAGCTTTATTTTGTCTATAGCATATCTTTCTACCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GGGTTTATTCTTTTCTTCATTGTTGTTGTGGCAATGGACACTTGACATCTTTCTTTTTCC
rJMSF033E02+          GGGTTTATTCTTTTCTTCATTGTTGTTGTGGCAGTGGACACTTGACATCTTTCTTTTTCC
rJMSF043A17+          GGGTTTATTCTTTTCTTCATTGTTGTTGTGGCAATGGACACTTGACATCTTTCTTTTTCC
rJMSF011M06+          GGGTTTATTCTTTTCTTCATTGTTGTTGTGGCAATGGACACTTGACATCTTTCTTTTTCC
                      ____________________________________________________________
consensus             GGGTTTATTCTTTTCTTCATTGTTGTTGTGGCAATGGACACTTGACATCTTTCTTTTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          ATCAACTAATCAAGTACTTCTCATACTTC-ACAGTATGACTGTTGTGTAAA-CTGTAGAG
rJMSF033E02+          ATCAACTAATCAAGTACTTCTCATACTTC-ACAGTATGACTGTTGTGTAAA-CTGTAGAG
rJMSF043A17+          ATCAACTAATCAAGTACTTCTCATACTTCAACAGTATGACTGTTGTGTAAAGCTGTAGAG
rJMSF011M06+          ATCAACTAATCAAGTACTTCTCATACTTC-ACAGTATGACTGTTGTGTAAA-CTGTAGAG
                      ____________________________________________________________
consensus             ATCAACTAATCAAGTACTTCTCATACTTC-ACAGTATGACTGTTGTGTAAA-CTGTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046G03+          GCAACAATATTGGAC                                             
rJMSF033E02+          GCAACAATATTGGAC                                             
rJMSF043A17+          GCAACAATATTGGAC                                             
rJMSF011M06+          GCAACAATATTGGACAATGTAAAATTATTTGCTACTACTATTTGTAAGAGTTATGATGAC
                      ____________________________________________________________
consensus             GCAACAATATTGGACAATGTAAAATTATTTGCTACTACTATTTGTAAGAGTTATGATGAC