Contig 011264:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010I07Sequence320005115 (2)ref|XP_009622104.1|6e-46PREDICTED: transcription factor LHW-like [Nicotiana tomentosiformis]131011264 (2)
JMSF026O12Sequence643005115 (2)emb|CDP00193.1|3e-113unnamed protein product [Coffea canephora]131011264 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026O12+                                          TNGCACACAGTNNTCTCTTNAGAGAGAG
rJMSF010I07+                                                              AGAGAGAG
                      ____________________________________________________________
consensus                                             TNGCACACAGTNNTCTCTTNAGAGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026O12+          AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTATTAAGATCACCT
rJMSF010I07+          AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTATTAAGATCACCT
                      ____________________________________________________________
consensus             AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTATTAAGATCACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026O12+          TCAAAAACTGCTAACAATAATGTAGCTTCTTAGT                          
rJMSF010I07+          TCAAAAACTGCTAACAATAATGTAGCTTCTTAGTATTAAGTTGCTTGAATTAGAAGAAGT
                      ____________________________________________________________
consensus             TCAAAAACTGCTAACAATAATGTAGCTTCTTAGTATTAAGTTGCTTGAATTAGAAGAAGT