Contig 011256:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040E03Sequence508011256 (6)gb|KEH16394.1|4e-5860S ribosomal protein L37a-2 [Medicago truncatula]
JMSF009D11Sequence295011256 (6)gb|KEH16394.1|1e-4760S ribosomal protein L37a-2 [Medicago truncatula]408011256 (6)gb|KEH16394.1|1e-5860S ribosomal protein L37a-2 [Medicago truncatula]
JMSF013P13Sequence425011256 (6)gb|KEH16394.1|2e-5860S ribosomal protein L37a-2 [Medicago truncatula]454011256 (6)gb|KEH16394.1|2e-5860S ribosomal protein L37a-2 [Medicago truncatula]
JMSF018P13Sequence263011256 (6)ref|XP_007209764.1|3e-39hypothetical protein PRUPE_ppa013350mg [Prunus persica] gb|EMJ10963.1| hypotheti

Alignment

This contig is upended


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JMSF009D11-                      GGGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
JMSF013P13-                       GGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
rJMSF018P13+                      GGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
rJMSF013P13+                      GGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
JMFN040E03+                                                 CGGCCGTCTCAGCGCTGTTATC
rJMSF009D11+                      GGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
                      ____________________________________________________________
consensus                        GGGTTCGTCTTCATCTTCGTACAGACTCGGCCGTCTCAGCGCTGTTATC
 
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JMSF009D11-           CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
JMSF013P13-           CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
rJMSF018P13+          CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGNTGGTATTGTTGGGAAGTACGGTAC
rJMSF013P13+          CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
JMFN040E03+           CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
rJMSF009D11+          CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
                      ____________________________________________________________
consensus             CTAGCTCCCCAAGATGACCAAGAGAACCAAGAAGGCTGGTATTGTTGGGAAGTACGGTAC
 
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JMSF009D11-           CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
JMSF013P13-           CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
rJMSF018P13+          CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
rJMSF013P13+          CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
JMFN040E03+           CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
rJMSF009D11+          CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
                      ____________________________________________________________
consensus             CCGCTATGGTGCCAGTTTGAGAAAACAAATAAAGAAGATGGAGGTCAGTCAGCATAGCAA
 
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JMSF009D11-           GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
JMSF013P13-           GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
rJMSF018P13+          GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
rJMSF013P13+          GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
JMFN040E03+           GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
rJMSF009D11+          GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
                      ____________________________________________________________
consensus             GTACTTCTGTGAGTTCTGTGGGAAGTACGCGGTGAAGAGGAAAGCTGTGGGTATTTGGGG
 
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JMSF009D11-           TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
JMSF013P13-           TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
rJMSF018P13+          TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTG                         
rJMSF013P13+          TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
JMFN040E03+           TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
rJMSF009D11+          TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
                      ____________________________________________________________
consensus             TTGCAAAGACTGCGGGAAAGTCAAAGCTGGTGGTGCTTACACACTGAACACTGCTAGTGC
 
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JMSF009D11-           TGTTAC                                                      
JMSF013P13-           TGTTACAGTAAGGAGCACCATCCGAAGGCT                              
rJMSF013P13+          TGTTACAGTAAGGAGCACCATCCGAAGGCT                              
JMFN040E03+           TGTTACAGTAAGGAGCACCATCCGAAGGCT                              
rJMSF009D11+          TGTTACAGTAAGGAGCACCATCCGAAGGCTTAGGGAGCAAACCGAGAGCTAGAAACGCGA
                      ____________________________________________________________
consensus             TGTTACAGTAAGGAGCACCATCCGAAGGCTTAGGGAGCAAACCGAGAGCTAGAAACGCGA
 
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rJMSF009D11+          AGCTAGTAGTCAAGCTTGAGACTTTTATACTTTGGTTGTTTTGTAGCTATCAAAATCTAG
                      ____________________________________________________________
consensus             AGCTAGTAGTCAAGCTTGAGACTTTTATACTTTGGTTGTTTTGTAGCTATCAAAATCTAG