Contig 011254:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003K13Sequence609011254 (2)gb|KHG13060.1|2e-75ATPase family AAA domain-containing protein 1-A [Gossypium arboreum]
JMSF009B03Sequence356016707782011254 (2)gb|KHG13060.1|3e-110ATPase family AAA domain-containing protein 1-A [Gossypium arboreum]

Alignment

This contig is upended


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rJMSF009B03-                                                                    AA
                      ____________________________________________________________
consensus                                                                       AA
 
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JMFN003K13+                                         CTTCTGCTAGTTCTCTCAGCTAAATGCATT
rJMSF009B03-          ATGATTGAGTTGAAGTTGCATCCTACGCAACTTCTGCTAGTTCTCTCAGCTAAATGCATT
                      ____________________________________________________________
consensus             ATGATTGAGTTGAAGTTGCATCCTACGCAACTTCTGCTAGTTCTCTCAGCTAAATGCATT
 
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JMFN003K13+           TGATAATAATATTACACGCTTCTCTTGCATGTTATAGAGGGAAATATAGATATGTATGTA
rJMSF009B03-          TGATAATAATATTACACGCTTCTCTTGCATGTTATAGAGGGAAATATAGATATGTATGTA
                      ____________________________________________________________
consensus             TGATAATAATATTACACGCTTCTCTTGCATGTTATAGAGGGAAATATAGATATGTATGTA
 
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JMFN003K13+           TAGATCGAAGAGAGGAACCTTTGCAAACGCGCATCCTTTCAGCACGCTTTGTCTATCCCA
rJMSF009B03-          TAGATCGAAGAGAGGAACCTTTGCAAACGCGCATCCTTTCAGCACGCTTTGTCTATCCCA
                      ____________________________________________________________
consensus             TAGATCGAAGAGAGGAACCTTTGCAAACGCGCATCCTTTCAGCACGCTTTGTCTATCCCA
 
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JMFN003K13+           AAATGGTTAATTAATTCCGGTTGTTTTTGCTTCAAAAACCGAATGGGGACTTTCTCCGGC
rJMSF009B03-          AAATGGTTAATTAATTCCGGTTGTTTTTGCTTCAAAAACCGAATGGGGACTTTCTCCGGC
                      ____________________________________________________________
consensus             AAATGGTTAATTAATTCCGGTTGTTTTTGCTTCAAAAACCGAATGGGGACTTTCTCCGGC
 
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JMFN003K13+           TCCCACCTTCACCGTACTGTTCGTTCCATTTTCTTAACTCATTCATGCTGGCTGCATCAT
rJMSF009B03-          TCCCACCTTCACCGTACTGTTCGTTCCATTTTCTTAACTCATTCATGCTGGTTGCATCAT
                      ____________________________________________________________
consensus             TCCCACCTTCACCGTACTGTTCGTTCCATTTTCTTAACTCATTCATGCTGGTTGCATCAT
 
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JMFN003K13+           ATGCAACCGATGGTCCCACCTTTGCTTTTGATTGAAGAAAGTCGTCCAAGTTGAGTGACC
rJMSF009B03-          ATGCAACCGATGGTCCCACCTTTGCTTTTGATTGAAGAAAGTCGTCCAAGTTGAGTGACC
                      ____________________________________________________________
consensus             ATGCAACCGATGGTCCCACCTTTGCTTTTGATTGAAGAAAGTCGTCCAAGTTGAGTGACC
 
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JMFN003K13+           GTAAAGTAGGATGCCCATCGGGTTTCTCTCCCTTCATTTCCACCTCCAGTAGTTCCTGAA
rJMSF009B03-          GTAAAGTAGGATGCCCATCGGGTTTCTCTCCCTTCATTTCCACCTCCAGTAGTTCCTGAA
                      ____________________________________________________________
consensus             GTAAAGTAGGATGCCCATCGGGTTTCTCTCCCTTCATTTCCACCTCCAGTAGTTCCTGAA
 
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JMFN003K13+           CAGGCCGATATGCTGCTGCAATACAAAGGTTCTTCAAATCACTTCCTGAATAACCTTCAG
rJMSF009B03-          CAGGCCGATATGCTGCTGCAATACAAAGGTTCTTCAAATCACTTCCTGAATAACCTTCAG
                      ____________________________________________________________
consensus             CAGGCCGATATGCTGCTGCAATACAAAGGTTCTTCAAATCACTTCCTGAATAACCTTCAG
 
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JMFN003K13+           TTGCATTTGCCAGTTGCTCAAACGGAAAGTTTGTCTCTAAATTTTCTTGTGCAAGAATTA
rJMSF009B03-          TTGCATTTGCCAGTTGCTCAAACGGAAAGTTTGTCTCTAAATTTTCTTGTGCAAGAATTA
                      ____________________________________________________________
consensus             TTGCATTTGCCAGTTGCTCAAACGGAAAGTTTGTCTCTAAATTTTCTTGTGCAAGAATTA
 
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JMFN003K13+           TGTTAAGTATTTTGTGTCGATTTTCAGCATCTGGAAGGTCCACATAAATCCTTCTCGGTA
rJMSF009B03-          TGTTAAGTATTTTGTGTCGATTTTCAGCATCTGGAAGGTCCACATAAATCCTTCTCGGTA
                      ____________________________________________________________
consensus             TGTTAAGTATTTTGTGTCGATTTTCAGCATCTGGAAGGTCCACATAAATCCTTCTCGGTA
 
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JMFN003K13+           AACGTCGAATAACAGCATCGTCAAGATCAAATGGACGGT                     
rJMSF009B03-          AACGTCGAATAACAGCATCGTCAAGATCAAATGGACGGTTTGTTGCACCAAGAATTAGGA
                      ____________________________________________________________
consensus             AACGTCGAATAACAGCATCGTCAAGATCAAATGGACGGTTTGTTGCACCAAGAATTAGGA
 
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rJMSF009B03-          TTCGTTGGCTATCTTTTGACCTCAAGCCATCCCACGCAGCCATAAATTCATTACGCATTC
                      ____________________________________________________________
consensus             TTCGTTGGCTATCTTTTGACCTCAAGCCATCCCACGCAGCCATAAATTCATTACGCATTC
 
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rJMSF009B03-          TTCTAGTGGCCTCATGTTCAAAGGCACCACCACGAGCACCTAGCAGGCTATCAACCTCAT
                      ____________________________________________________________
consensus             TTCTAGTGGCCTCATGTTCAAAGGCACCACCACGAGCACCTAGCAGGCTATCAACCTCAT