| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008O16 | Sequence | 219 | 006406 (3) | 648 | 011253 (3) | ref|XP_002533134.1| | 1e-102 | acyl-CoA oxidase, putative [Ricinus communis] gb|EEF29246.1| acyl-CoA oxidase, p | |||
| JMSF018E24 | Sequence | 461 | 006406 (3) | ref|XP_006355366.1| | 3e-41 | PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Solanum tuberosum] | 634 | 011253 (3) | ref|XP_002533134.1| | 8e-103 | acyl-CoA oxidase, putative [Ricinus communis] gb|EEF29246.1| acyl-CoA oxidase, p |
| JMSF024N22 | Sequence | 659 | 006536 (2) | ref|XP_011022766.1| | 3e-63 | PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Populus euphratica] | 803 | 011253 (3) | ref|XP_006355366.1| | 3e-134 | PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF024N22+ TGAGGAATGACCATGACATATTTCAAACA
____________________________________________________________
consensus TGAGGAATGACCATGACATATTTCAAACA
. : . : . : . : . : . :
rJMSF024N22+ TTGAAGGGGACAACACAGTCCTTCTACAGCAGGTAGCAGGATTTCTTTTGAAGCAGTATA
____________________________________________________________
consensus TTGAAGGGGACAACACAGTCCTTCTACAGCAGGTAGCAGGATTTCTTTTGAAGCAGTATA
. : . : . : . : . : . :
rJMSF024N22+ GGGAGAAGTTCAAAGGTGGGACACTTGCAGTTACATGGAACTATTTAAGACAGTCGATGA
____________________________________________________________
consensus GGGAGAAGTTCAAAGGTGGGACACTTGCAGTTACATGGAACTATTTAAGACAGTCGATGA
. : . : . : . : . : . :
rJMSF018E24+ CTCAGCCTAACCCAGTAACTTCTAGGTGGGAAGGTGAAGACCATTTGC
rJMSF024N22+ ATTCTTATCTCTCTCAGCCTAACCCAGTAACTGCTAGGTGGGAAAGTGAAGACCATTTGC
rJMSF008O16+ CTCAGCCTAACCCAGTAACTTCTAGGTGGGAAGGTGAAGACCATTTGC
____________________________________________________________
consensus ATTCTTATCTCTCTCAGCCTAACCCAGTAACTTCTAGGTGGGAAGGTGAAGACCATTTGC
. : . : . : . : . : . :
rJMSF018E24+ GAGATCCTAACTTCCAGTTAGATGCTTTTAGGTATCGCACATCTCGGTTACTTCAAAGTG
rJMSF024N22+ GAGATCCAAACTTCCAGTTGGATGCTTTTAGGTATCGTACATCACGATTGCTTCAAGGTG
rJMSF008O16+ GAGATCCTAACTTCCAGTTAGATGCTTTTAGGTATCGCACATCTCGGTTACTTCAAAGTG
____________________________________________________________
consensus GAGATCCTAACTTCCAGTTAGATGCTTTTAGGTATCGCACATCTCGGTTACTTCAAAGTG
. : . : . : . : . : . :
rJMSF018E24+ TTGCTATTCGACTTCAGAAGCACTCAAAGAATCTTGGGGGCTTTGGTGCTTGGAATAGAT
rJMSF024N22+ TCTCTGTTCGACTTCAGAAGCACTTGAAGACCCTGGGGGGCTTTGGTGCTTGGAATAGAT
rJMSF008O16+ TTGCTATTCGACTTCAGAAGCACTCAAAGAATCTTGGGGGCTTTGGTGCTTGGAATAGAT
____________________________________________________________
consensus TTGCTATTCGACTTCAGAAGCACTCAAAGAATCTTGGGGGCTTTGGTGCTTGGAATAGAT
. : . : . : . : . : . :
rJMSF018E24+ GCTTAAATCACCTCTTGACACTTGCAGAGTCCCACATTGAGTCCTTCATCCTTGAAATTT
rJMSF024N22+ GCTTAAATCATCTGTTGACGCTCGCAGAGTCCCACATTGAGTCCTTCATCCTTGAAAACT
rJMSF008O16+ GCTTAAATCACCTCTTGACACTTGCAGAGTCCCACATTGAGTCCTTCATCCTTGAAATTT
____________________________________________________________
consensus GCTTAAATCACCTCTTGACACTTGCAGAGTCCCACATTGAGTCCTTCATCCTTGAAATTT
. : . : . : . : . : . :
rJMSF018E24+ TTATTCAAGCTGTCAAAAGTTGTCCCGATCCCAGTTCTCGTGCTGCTCTGAAACTTGTCT
rJMSF024N22+ TCATTGAAGCCATAAAACGTTGTCCTAATGCCAACTCTCGTGCTGCCCTGAAACTCGTCT
rJMSF008O16+ TTATTCAAGCTGTCAAAAGTTGTCCCGATCCCAGTTCTCGTGCTGCTCTGAAACTTGTCT
____________________________________________________________
consensus TTATTCAAGCTGTCAAAAGTTGTCCCGATCCCAGTTCTCGTGCTGCTCTGAAACTTGTCT
. : . : . : . : . : . :
rJMSF018E24+ GCGACCTTTATGCTTTGAATCGAATCTGGAATGATATAGGAACTTACCGCAATGTAGACT
rJMSF024N22+ GCGACCTTTATGCCTTGGATCGAATCTGGAATGACATAGGAACTTATCGCAATGTGGATT
rJMSF008O16+ GCGACCTTTATGCTTTGAATCGAATCTGGAATGATATAGGAACTTACCGCAATGTAGACT
____________________________________________________________
consensus GCGACCTTTATGCTTTGAATCGAATCTGGAATGATATAGGAACTTACCGCAATGTAGACT
. : . : . : . : . : . :
rJMSF018E24+ ATGTGGCTCCTAACAAAGCTAAGGCAATTAACAAGTTAACTGAATATCTGTGCTTCCAAG
rJMSF024N22+ ACCTGGCTCCTAACAAAGCTAAGGCAGTTCAAAAGTTGATGGAATATCTGTGTTTCCAAG
rJMSF008O16+ ATGTGGCTCCTAACAAAGCTAAGGCAATTAACAAGTTAACTGAATATCTGTGCTTCCAAG
____________________________________________________________
consensus ATGTGGCTCCTAACAAAGCTAAGGCAATTAACAAGTTAACTGAATATCTGTGCTTCCAAG
. : . : . : . : . : . :
rJMSF018E24+ TCAGAAATACAGCAAAGGACCTCGTTGATGCCTTTGACCTACCAGATTATGTTATACGGG
rJMSF024N22+ TTAGGAATATCGCAAAGGAGCTCATAGATGGCTTTGATATACCCGAGTATGTTATACGCG
rJMSF008O16+ TCAGAAATACAGCAAAGGACCTCGTTGATGCCTTTGACCTACCAGATTATGTTATACGGG
____________________________________________________________
consensus TCAGAAATACAGCAAAGGACCTCGTTGATGCCTTTGACCTACCAGATTATGTTATACGGG
. : . : . : . : . : . :
rJMSF018E24+ CTCCAATTGCTTTGCAGGAT
rJMSF024N22+ CTCCAATCGCTTTGCAGGAT
rJMSF008O16+ CTCCAATTGCTTTGCAGGATTCGGAACAAGTTTACTTACAATACGCTCAATATGCCGGAT
____________________________________________________________
consensus CTCCAATTGCTTTGCAGGATTCGGAACAAGTTTACTTACAATACGCTCAATATGCCGGAT
. : . : . : . : . : . :
rJMSF008O16+ TCTAGTTCCTGCACAAGGCAATAAACAACTTCATCTTCAGATAGGATAGTTTCAAATATA
____________________________________________________________
consensus TCTAGTTCCTGCACAAGGCAATAAACAACTTCATCTTCAGATAGGATAGTTTCAAATATA
. : . : . : . : . : . :
rJMSF008O16+ CAACAGAAAATAAAAAGGGGGATGGGTCTGGGATCATCATTGATTTGAATCTACAACTAT
____________________________________________________________
consensus CAACAGAAAATAAAAAGGGGGATGGGTCTGGGATCATCATTGATTTGAATCTACAACTAT