Contig 011252:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008N11Sequence287003650 (2)ref|XP_004252009.1|2e-08PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Solanum lycop750011252 (3)ref|XP_009629875.1|2e-63PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom
JMSF019P15Sequence473003650 (2)ref|XP_004252009.1|3e-08PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Solanum lycop788011252 (3)ref|XP_009629875.1|2e-71PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom
JMSF040P18Sequence628002267 (2)ref|XP_010112862.1|8e-18hypothetical protein L484_014712 [Morus notabilis] gb|EXC34985.1| hypothetical p859011252 (3)ref|XP_009629875.1|9e-73PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+                                                             GGGGAAGGT
                      ____________________________________________________________
consensus                                                                GGGGAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          ATAAGGAGTACAGAGAAAGTCAAGATGAGAAGACAGACCATAGGATGAATTTCGGAGACC
                      ____________________________________________________________
consensus             ATAAGGAGTACAGAGAAAGTCAAGATGAGAAGACAGACCATAGGATGAATTTCGGAGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          ATAAAAGACATGCTTATGAAGAGTCTAGGGGATGCCATGATGAGTCAATTTCAACTGATA
                      ____________________________________________________________
consensus             ATAAAAGACATGCTTATGAAGAGTCTAGGGGATGCCATGATGAGTCAATTTCAACTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          CTAGGGAATTGGGTGTTGAGAAGTATATCAAAGAGGACAAGAAGGAATTTGATGCTAGAA
                      ____________________________________________________________
consensus             CTAGGGAATTGGGTGTTGAGAAGTATATCAAAGAGGACAAGAAGGAATTTGATGCTAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          ACAATTTGAAGGAACAGTGCGCTAAGAGGTCCAAGTTTGATACCATTGATGGGGAGACAA
                      ____________________________________________________________
consensus             ACAATTTGAAGGAACAGTGCGCTAAGAGGTCCAAGTTTGATACCATTGATGGGGAGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          ACCGTGGAAAAGATGTTTTGAAGGCAACAACCTTCGCTGATGAAAAGCAGTCTTCAACTT
                      ____________________________________________________________
consensus             ACCGTGGAAAAGATGTTTTGAAGGCAACAACCTTCGCTGATGAAAAGCAGTCTTCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          CCAAGCATGATGAAGTCACTTTGGAGCAGGGAGTGAAAGACTCTGATATAGATGCTGCAA
rJMSF019P15+                     GAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
rJMSF008N11+                     GAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
                      ____________________________________________________________
consensus             CCAAGCATGATGAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          AAGTTGCTGCTATGAAGGCTGCTGAATTAGTCAATAGGAACCTTATTGGAACTGGTTACA
rJMSF019P15+          AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
rJMSF008N11+          AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
                      ____________________________________________________________
consensus             AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAACACTACCAATTCTG
rJMSF019P15+          TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
rJMSF008N11+          TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
                      ____________________________________________________________
consensus             TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          AAGAGTCTGCACACCGCTGGGATACTTCAATGTTTGATGATTGTGAAAGACAGGAAAAGT
rJMSF019P15+          AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
rJMSF008N11+          AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
                      ____________________________________________________________
consensus             AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          TCAACAAACTCATGGGTGTGAAGGGCAATATGAAGATGGAGCACAAACCTGGAATCCAAG
rJMSF019P15+          TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
rJMSF008N11+          TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
                      ____________________________________________________________
consensus             TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          ATGCAGAGAAGCAGAAGGAGCTGCAGATGGACTTGGAGAAGCAGTACACTGCTGGACTTC
rJMSF019P15+          ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
rJMSF008N11+          ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
                      ____________________________________________________________
consensus             ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040P18+          GTCGAAGAGATGG                                               
rJMSF019P15+          GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
rJMSF008N11+          GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
                      ____________________________________________________________
consensus             GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019P15+          ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
rJMSF008N11+          ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
                      ____________________________________________________________
consensus             ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019P15+          ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
rJMSF008N11+          ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
                      ____________________________________________________________
consensus             ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019P15+          TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
rJMSF008N11+          TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
                      ____________________________________________________________
consensus             TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019P15+          CTTGTGGTGCAGCTCAGAAT                                        
rJMSF008N11+          CTTGTGGTGCAGCTCAGAATTGCTCCTGGTGAGGATTATTAACAAAGCATTTATATGACA
                      ____________________________________________________________
consensus             CTTGTGGTGCAGCTCAGAATTGCTCCTGGTGAGGATTATTAACAAAGCATTTATATGACA