Contig 011250:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035K21Sequence606011250 (3)ref|XP_009781147.1|5e-85PREDICTED: cellulose synthase-like protein H1 isoform X1 [Nicotiana sylvestris]
JMSF007O06Sequence307003799 (5)ref|XP_009781148.1|3e-15PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]769011250 (3)ref|XP_009588345.1|4e-90PREDICTED: cellulose synthase-like protein H1 [Nicotiana tomentosiformis]
JMSF037O06Sequence635003799 (5)ref|XP_009781148.1|2e-80PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]687011250 (3)ref|XP_009781147.1|2e-75PREDICTED: cellulose synthase-like protein H1 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF007O06+                     CTGGGGTAATGGAAATACTTATCAGCAAGAAAAGCCCAATAATTTTGGC
                      ____________________________________________________________
consensus                        CTGGGGTAATGGAAATACTTATCAGCAAGAAAAGCCCAATAATTTTGGC
 
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JMFN035K21-                  GGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
rJMSF037O06+                                AGGCAATGCTTGGCCTATCTATGGATTATGGGTTGGCC
rJMSF007O06+          CCTATTTGGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
                      ____________________________________________________________
consensus             CCTATTTGGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
 
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JMFN035K21-           CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
rJMSF037O06+          CATTCGGCCCTTTTTTGAAATATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
rJMSF007O06+          CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
                      ____________________________________________________________
consensus             CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
 
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JMFN035K21-           TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
rJMSF037O06+          TTCTCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCAT
rJMSF007O06+          TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
                      ____________________________________________________________
consensus             TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
 
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JMFN035K21-           CATCTACAACTTGTACAATCTATCGGAGTACATTAGAACCGGGGAGTCGTTGCGGGCGTG
rJMSF037O06+          TATCTACAACTTGTACGGTCTATTCAAATACATCGAAACCGGGGAGTCGTTGCGGGCGTG
rJMSF007O06+          CATCTACAACTTGTACAATCTATCGGAGTACATCAGAACCGGGGAGTCGTTGCGGGCGTG
                      ____________________________________________________________
consensus             CATCTACAACTTGTACAATCTATCGGAGTACATCAGAACCGGGGAGTCGTTGCGGGCGTG
 
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JMFN035K21-           GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
rJMSF037O06+          GTGGAACAACCAAAGAATGTTGAGAGTTTACGCATCTGGGTCATGGTTGTTCGGATTCCT
rJMSF007O06+          GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
                      ____________________________________________________________
consensus             GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
 
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JMFN035K21-           AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
rJMSF037O06+          AAGTGGGGTTGTTAAGGTTTTTGGATTGTCTGAAGCGGTGTTCGAAGTCACCAAGAAAGA
rJMSF007O06+          AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
                      ____________________________________________________________
consensus             AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
 
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JMFN035K21-           TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
rJMSF037O06+          TCATTCGAGCGACGAAGCTCTAGACAAGGATGATGACTCCAAGGTCGGACGGTTCACGTT
rJMSF007O06+          TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
                      ____________________________________________________________
consensus             TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
 
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JMFN035K21-           CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
rJMSF037O06+          TGATGAATCTCCGTTGTTTGTCCCCGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
rJMSF007O06+          CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
                      ____________________________________________________________
consensus             CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
 
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JMFN035K21-           GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
rJMSF037O06+          GTTTATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTAGGAGAAGCAATATG
rJMSF007O06+          GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
                      ____________________________________________________________
consensus             GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
 
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JMFN035K21-           CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGCTTGTTGGAAAGGGGAA
rJMSF037O06+          CAGTGTTTGGGTAATATTAATGTATTGGGCGTTTCTTAAGGGGTTGTTTGGAAAGGGAAA
rJMSF007O06+          CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGTTGTTTGGAAAGGGGAA
                      ____________________________________________________________
consensus             CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGTTGTTTGGAAAGGGGAA
 
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JMFN035K21-           GTATGGGATTCCA                                               
rJMSF037O06+          GTTTGGGATTCCATTGTC                                          
rJMSF007O06+          GTATGGGATTCCATTGTCTATTATTGTAAAGTCTGTGGGATTGGCATTGCTTTTTGTCCA
                      ____________________________________________________________
consensus             GTATGGGATTCCATTGTCTATTATTGTAAAGTCTGTGGGATTGGCATTGCTTTTTGTCCA
 
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rJMSF007O06+          TGTCTGCAAAAGGGTATACTGATCCTACTTCTGAGCAATATAGGTATCAAGTTATCAGTA
                      ____________________________________________________________
consensus             TGTCTGCAAAAGGGTATACTGATCCTACTTCTGAGCAATATAGGTATCAAGTTATCAGTA