Contig 011250:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035K21Sequence606011250 (3)ref|XP_009781147.1|5e-85PREDICTED: cellulose synthase-like protein H1 isoform X1 [Nicotiana sylvestris]
JMSF007O06Sequence307003799 (5)ref|XP_009781148.1|3e-15PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]769011250 (3)ref|XP_009588345.1|4e-90PREDICTED: cellulose synthase-like protein H1 [Nicotiana tomentosiformis]
JMSF037O06Sequence635003799 (5)ref|XP_009781148.1|2e-80PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]687011250 (3)ref|XP_009781147.1|2e-75PREDICTED: cellulose synthase-like protein H1 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007O06+ CTGGGGTAATGGAAATACTTATCAGCAAGAAAAGCCCAATAATTTTGGC
                      ____________________________________________________________
consensus CTGGGGTAATGGAAATACTTATCAGCAAGAAAAGCCCAATAATTTTGGC
 
. : . : . : . : . : . :
JMFN035K21- GGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
rJMSF037O06+ AGGCAATGCTTGGCCTATCTATGGATTATGGGTTGGCC
rJMSF007O06+ CCTATTTGGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
                      ____________________________________________________________
consensus CCTATTTGGGCGGCTCCAGTTGAGGCAATGCCTAGCATATCTATGGGTTATGTGTTGGCC
 
. : . : . : . : . : . :
JMFN035K21- CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
rJMSF037O06+ CATTCGGCCCTTTTTTGAAATATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
rJMSF007O06+ CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
                      ____________________________________________________________
consensus CATTCGGCCCATTTTTGAAACATGTTATTCTCTTCTCCCCGCGTATTGCATCATCAACAA
 
. : . : . : . : . : . :
JMFN035K21- TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
rJMSF037O06+ TTCTCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCAT
rJMSF007O06+ TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
                      ____________________________________________________________
consensus TTCCCACTTCCAACCAAAGCTAAACGAAGCCGCCATTGTAATACCAGCTTCCATTTTCCT
 
. : . : . : . : . : . :
JMFN035K21- CATCTACAACTTGTACAATCTATCGGAGTACATTAGAACCGGGGAGTCGTTGCGGGCGTG
rJMSF037O06+ TATCTACAACTTGTACGGTCTATTCAAATACATCGAAACCGGGGAGTCGTTGCGGGCGTG
rJMSF007O06+ CATCTACAACTTGTACAATCTATCGGAGTACATCAGAACCGGGGAGTCGTTGCGGGCGTG
                      ____________________________________________________________
consensus CATCTACAACTTGTACAATCTATCGGAGTACATCAGAACCGGGGAGTCGTTGCGGGCGTG
 
. : . : . : . : . : . :
JMFN035K21- GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
rJMSF037O06+ GTGGAACAACCAAAGAATGTTGAGAGTTTACGCATCTGGGTCATGGTTGTTCGGATTCCT
rJMSF007O06+ GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
                      ____________________________________________________________
consensus GTGGAACAACCAAAGAATGTGGAGAGTGTACGCATCTGGGTCGTGGTTGTTCGGATTCCT
 
. : . : . : . : . : . :
JMFN035K21- AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
rJMSF037O06+ AAGTGGGGTTGTTAAGGTTTTTGGATTGTCTGAAGCGGTGTTCGAAGTCACCAAGAAAGA
rJMSF007O06+ AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
                      ____________________________________________________________
consensus AAGCGGGGTTGTTAAGGTTTTTGGATTGTCGGAAACGGTGTTCGAAGTCACCAAGAAAGA
 
. : . : . : . : . : . :
JMFN035K21- TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
rJMSF037O06+ TCATTCGAGCGACGAAGCTCTAGACAAGGATGATGACTCCAAGGTCGGACGGTTCACGTT
rJMSF007O06+ TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
                      ____________________________________________________________
consensus TCATTCGAGCGACGAAACTCTAGACAAGGATGACGACTCCAACGTCGGACGGTTCACATT
 
. : . : . : . : . : . :
JMFN035K21- CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
rJMSF037O06+ TGATGAATCTCCGTTGTTTGTCCCCGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
rJMSF007O06+ CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
                      ____________________________________________________________
consensus CAATGAATCTCCGCTGTTTGTCCCTGGCACAACCATTTTGCTGGTGAACTTGGCAGCTTT
 
. : . : . : . : . : . :
JMFN035K21- GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
rJMSF037O06+ GTTTATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTAGGAGAAGCAATATG
rJMSF007O06+ GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
                      ____________________________________________________________
consensus GTTCATTGGATTTCTGGATTTTAAACAGAATAAGAGTTGGAGTTTTGGAGAGGTAATATG
 
. : . : . : . : . : . :
JMFN035K21- CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGCTTGTTGGAAAGGGGAA
rJMSF037O06+ CAGTGTTTGGGTAATATTAATGTATTGGGCGTTTCTTAAGGGGTTGTTTGGAAAGGGAAA
rJMSF007O06+ CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGTTGTTTGGAAAGGGGAA
                      ____________________________________________________________
consensus CAGTGTGTGGGTAATATTAATGTATTGGGCATTTCTTAAGGGGTTGTTTGGAAAGGGGAA
 
. : . : . : . : . : . :
JMFN035K21- GTATGGGATTCCA
rJMSF037O06+ GTTTGGGATTCCATTGTC
rJMSF007O06+ GTATGGGATTCCATTGTCTATTATTGTAAAGTCTGTGGGATTGGCATTGCTTTTTGTCCA
                      ____________________________________________________________
consensus GTATGGGATTCCATTGTCTATTATTGTAAAGTCTGTGGGATTGGCATTGCTTTTTGTCCA
 
. : . : . : . : . : . :
rJMSF007O06+ TGTCTGCAAAAGGGTATACTGATCCTACTTCTGAGCAATATAGGTATCAAGTTATCAGTA
                      ____________________________________________________________
consensus TGTCTGCAAAAGGGTATACTGATCCTACTTCTGAGCAATATAGGTATCAAGTTATCAGTA