| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001B23 | Sequence | 811 | 011249 (9) | emb|CDP03661.1| | 6e-139 | unnamed protein product [Coffea canephora] | |||||
| JMFF022F22 | Sequence | 533 | 011249 (9) | ref|XP_002300824.2| | 240 | selenocysteine methyltransferase family protein [Populus trichocarpa] gb|EEE8009 | 754 | 011249 (9) | gb|AGG09240.1| | 5e-112 | selenocysteine methyltransferase [Camellia sinensis] gb|AGM15930.1| selenocystei |
| JMFF024M22 | Sequence | 529 | 011249 (9) | ref|XP_002300824.2| | 240 | selenocysteine methyltransferase family protein [Populus trichocarpa] gb|EEE8009 | 682 | 011249 (9) | gb|KJB23026.1| | 6e-65 | hypothetical protein B456_004G078000 [Gossypium raimondii] gb|KJB23027.1| hypoth |
| JMSF007N08 | Sequence | 272 | 011249 (9) | ref|XP_002300824.2| | 114 | selenocysteine methyltransferase family protein [Populus trichocarpa] gb|EEE8009 | 750 | 011249 (9) | gb|KJB23026.1| | 2e-53 | hypothetical protein B456_004G078000 [Gossypium raimondii] gb|KJB23027.1| hypoth |
| JMSF022D04 | Sequence | 689 | 011249 (9) | ref|XP_002300824.2| | 250 | selenocysteine methyltransferase family protein [Populus trichocarpa] gb|EEE8009 | 720 | 011249 (9) | ref|XP_010651998.1| | 3e-86 | PREDICTED: homocysteine S-methyltransferase 2 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF007N08- GAGAATCGCACTGCCC
JMFF022F22- TGTCGTCTGAGAATCGCACTGCCC
JMFF024M22- GAGAACCGCACTGCCC
JMSF022D04- GAGAATCGCACTGCCC
____________________________________________________________
consensus TGTCGTCTGAGAATCGCACTGCCC
. : . : . : . : . : . :
JMSF007N08- ACCGCGCCACCGCTGCTTACCTTGGACTTCGTGAAAATGGGGCCAGTCGGCGTCCATACA
JMFF022F22- ACCGCGCCACCGCTGCTTACCTTGGACTTCGTGAAAATGGGGCCAGTCGGCGTCCATACA
JMFF024M22- ACCGCGCCACCGCTGCTTACCTTGGACTTCGTGAAAATGGGGCCAGTCGGCGTCCATACA
JMSF022D04- ACCGCGCCACCGCTGCTTACCTTGGACTTCGTGAAAATGGGGCCAGTCGGCGTCCATACA
____________________________________________________________
consensus ACCGCGCCACCGCTGCTTACCTTGGACTTCGTGAAAATGGGGCCAGTCGGCGTCCATACA
. : . : . : . : . : . :
JMSF007N08- ACCAGCACAACTACGGCTTCGTCCTCGCTCATGACGGATTTCCTCCGGCAGTCCGGCGGC
JMFF022F22- ACCAGCACAACTACGGCTTCGTCCTCGCTCATGACGGATTTCCTCCGGCAGTCCGGCGGC
JMFF024M22- ACCAGCACAACTACGGCTTCGTCCTCGCTCATGACGGATTTCCTCCGGCAGTCCGGCGGC
JMSF022D04- ACCAGCACAACTACGGCTTCGTCCTCGCTCATGACGGATTTCCTCCGGCAGTCCGGCGGC
____________________________________________________________
consensus ACCAGCACAACTACGGCTTCGTCCTCGCTCATGACGGATTTCCTCCGGCAGTCCGGCGGC
. : . : . : . : . : . :
JMSF007N08- GTGGCCGTGATCGACGGCGGCCTCGCTACGGAGCTGGAACGTCATGGTGCGGACCTCAAT
JMFF022F22- GTGGCCGTGATCGACGGCGGCCTCGCTACGGACCTGGAACGTCATGGTGCGGACCTCAAT
JMFF024M22- GTGGCCGTGATCGACGGCGGCCTCGCTACGGAGCTGGAACGTCATGGTGCGGACCTCAAT
JMSF022D04- GTGGCCGTGATCGACGGCGGCCTCGCTACGGAGCTGGAACGTCATGGTGCGGACCTCAAT
____________________________________________________________
consensus GTGGCCGTGATCGACGGCGGCCTCGCTACGGAGCTGGAACGTCATGGTGCGGACCTCAAT
. : . : . : . : . : . :
JMSF007N08- GACCCTCTCTGGAGTGCCAAATGCCTTCTCGATTCCCCACACCTCATCCGCGCGGTACAC
JMFF022F22- GACCCTCTCTGGAGTGCCAAATGCCTTCTCGATTCCCCACACCTCATCCGCGCGGTACAC
JMFF024M22- GACCCTCTCTGGAGTGCCAAATGCCTTCTCGATTCCCCACACCTCATCCGCGCGGTACAC
JMSF022D04- GACCCTCTCTGGAGTGCCAAATGCCTTCTCGATTCCCCACACCTCATCCGCGCGGTACAC
____________________________________________________________
consensus GACCCTCTCTGGAGTGCCAAATGCCTTCTCGATTCCCCACACCTCATCCGCGCGGTACAC
. : . : . : . : . : . :
JMSF007N08- CTGGACTACCT
JMFF022F22- CTGGACTACCTTGAAGCTGGTGCAGGTGTAATAATCACTGCATCCTATCAGGGAACCATT
JMFF024M22- CTGGACTACCTTGAAGCTGGTGCAGGTGTAATAATCACTGCATCCTATCAGGGAACCATT
JMSF022D04- CTGGACTACCTTGAAGCTGGTGCAGGTGTAATAATCACTGCATCCTATCAGGGAACCATT
____________________________________________________________
consensus CTGGACTACCTTGAAGCTGGTGCAGGTGTAATAATCACTGCATCCTATCAGGGAACCATT
. : . : . : . : . : . :
JMFF022F22- CAGGGGTTCAAGGCCAAAGGTTTTTCCCAGGAAGAGAGTGAAGCCTTGCTTAGAAAAAGT
JMFF024M22- CAGGGGTTCAAGGCCAAAGGTTTTTCCCAGGAAGAGAGTGAAGCCTTGCTTAGAAAAAGT
JMSF022D04- CAGGGGTTCAAGGCCAAAGGTTTTTCCCAGGAAGAGAGTGAAGCCTTGCTTAGAAAAAGT
rJMFF001B23+ CCAGGAAGAGAGTGAAGCCTTGCTTAGAAAAAGT
____________________________________________________________
consensus CAGGGGTTCAAGGCCAAAGGTTTTTCCCAGGAAGAGAGTGAAGCCTTGCTTAGAAAAAGT
. : . : . : . : . : . :
JMFF022F22- GTT-CAAATAGCATGTGAAGCACGGAGTTTATACTATGAAAAACTCCAAAAAATTTCTTC
JMFF024M22- GTT-CAAATAGCATGTGAAGCACGGAGTTTATACTATGAAAAACTCCAAAAAATTTCTTC
JMSF022D04- GTT-CAAATAGCATGTGAAGCACGGAGTTTATACTATGAAAAACTCCAAAAAATTTCTTC
rJMFF001B23+ GTTCCAAATAGCATGTGAAGCACGGAGTTTATACTATGAAAAACTCCAAAAAATTTCTTC
rJMSF022D04+ TTC
____________________________________________________________
consensus GTT-CAAATAGCATGTGAAGCACGGAGTTTATACTATGAAAAACTCCAAAAAATTTCTTC
. : . : . : . : . : . :
JMFF022F22- TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTAGTTGCAGCATCTGT
JMFF024M22- TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTANTTGCAGCATCTGT
JMSF022D04- TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTAGTTGCAGCATCTGT
rJMFF001B23+ TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTAGTTGCAGCATCTGT
rJMSF022D04+ TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTAGTTGCAGCATCTGT
____________________________________________________________
consensus TGATTATACTACTGACGGAAAGGTTCTTAAGCATCGGCCCATATTAGTTGCAGCATCTGT
. : . : . : . : . : . :
JMFF022F22- TGGGAGTTATGGGGCTTATTTAGCTGATGG
JMFF024M22- TGGGAGTTATGGGGCTTATTTAGCTGATGG
JMSF022D04- TGGGAGTTATGGGGCTTATTTAGCTGATGGTTCTGAATACAG
rJMFF001B23+ TGGGAGTTATGGGGCTTATTTAGCTGATGGTTCTGAATACAGTGGGGACTATGGAGATGT
rJMSF022D04+ TGGGAGTTATGGGGCTTATTTAGCTGATGGTTCTGAATAC--------------------
____________________________________________________________
consensus TGGGAGTTATGGGGCTTATTTAGCTGATGGTTCTGAATACAGTGGGGACTATGGAGATGT
. : . : . : . : . : . :
rJMFF001B23+ AATGAATCTGGAGTTTCTAAAAGATTTTCACAGAAGAAGGGTTCAGGTTCTTGCAGATGC
rJMSF022D04+ ---------------------AGATTTTCACAGAAGAAGGGTTCAGGTTCTTGCAGATGC
rJMFF022F22+ AGATTTTCACAGAAGAAGGGTTCAGGTTCTTGCAGATGC
____________________________________________________________
consensus AATGAATCTGGAGTTTCTAAAAGATTTTCACAGAAGAAGGGTTCAGGTTCTTGCAGATGC
. : . : . : . : . : . :
rJMFF001B23+ TGGTGCTGATATAATGGCTTTTGAAACTGTGCCAAATAAGATTGAAGCTCAGGCTTTTGT
rJMSF022D04+ TGGTGCTGATATAATGGCTTTTGAAACTGTGCCAAATAAGATTGAAGCTCAGGCTTTTGT
rJMFF022F22+ TGGTGCTGATATAATGGCTTTTGAAACTGTGCCAAATAAGATTGAAGCTCAGGCTTTTGT
____________________________________________________________
consensus TGGTGCTGATATAATGGCTTTTGAAACTGTGCCAAATAAGATTGAAGCTCAGGCTTTTGT
. : . : . : . : . : . :
rJMFF001B23+ CCAGCTACTTGAGGAAGAGGACATACAAATTCCTGCGTGGTTGTCCTTCAATTCTAAGGA
rJMSF022D04+ CCAGCTACTTGAGGAAGAGGACATACAAATTCCTGCGTGGTTGTCCTTCAATTCTAAGGA
rJMFF022F22+ CCAGCTACTTGAGGAAGAGGACATACAAATTCCTGCGTGGTTGTCCTTCAATTCTAAGGA
rJMFF024M22+ TCCTTCAATTCTAAGGA
____________________________________________________________
consensus CCAGCTACTTGAGGAAGAGGACATACAAATTCCTGCGTGGTTGTCCTTCAATTCTAAGGA
. : . : . : . : . : . :
rJMFF001B23+ TGGTGTCAATGTAGTCAGTGGTGATTCTTTATCAGAATGTGCCGCGATTGCTGAATCATG
rJMSF022D04+ TGGTGTCAATGTAGTCAGTGGTGATTCTTTATCAGAATGTGCCGCGATTGCTGAATCATG
rJMFF022F22+ TGGTGTCAATGTAGTCAGTGGTGATTCTTTATCAGAATGTGCCGCGATTGCTGAATCATG
rJMFF024M22+ TGGTGTCAATGTAGTCAGTGGTGATTCTTTATCAGAATGTGCCGCGATTGCTGAATCATG
rJMSF007N08+ TATCAGAATGTGCCGCGATTGCTGAATCATG
____________________________________________________________
consensus TGGTGTCAATGTAGTCAGTGGTGATTCTTTATCAGAATGTGCCGCGATTGCTGAATCATG
. : . : . : . : . : . :
rJMFF001B23+ CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCA-GATCTAA
rJMSF022D04+ CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCATCATCTAA
rJMFF022F22+ CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCA-GATCTAA
rJMFF024M22+ CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCA-GATCTAA
rJMSF007N08+ CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCA-GATCTAA
____________________________________________________________
consensus CAAGAAGGTTGTTGCTGTGGGAATAAATTGCACCCCTCCTAGATTCATATCA-GATCTAA
. : . : . : . : . : . :
rJMFF001B23+ TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
rJMSF022D04+ TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
rJMFF022F22+ TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
rJMFF024M22+ TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
rJMSF007N08+ TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
____________________________________________________________
consensus TCTTGTCCATAAAAAAGGTTACAACCAAACCAATTCTTATATATCCAAACAGTGGCGAGA
. : . : . : . : . : . :
rJMFF001B23+ CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
rJMSF022D04+ CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
rJMFF022F22+ CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
rJMFF024M22+ CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
rJMSF007N08+ CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
____________________________________________________________
consensus CTTACGATGCTTATAAAAAGGAGTGGGTACAAAATACAGGGGTGTCCAATGAAGGTTTTG
. : . : . : . : . : . :
rJMFF001B23+ TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
rJMSF022D04+ TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
rJMFF022F22+ TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
rJMFF024M22+ TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
rJMSF007N08+ TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
____________________________________________________________
consensus TTTCCTATGTGAACAAATGGTGTGAGGTTGGAGCATCACTTGTTGGAGGGTGCTGCAGAA
. : . : . : . : . : . :
rJMFF001B23+ CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
rJMSF022D04+ CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
rJMFF022F22+ CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
rJMFF024M22+ CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
rJMSF007N08+ CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
____________________________________________________________
consensus CTACTCCCGAAACTATTAGAGCAATATGCAGTGCCCTCTCGAATGAAAAAGTGGCCACAT
. : . : . : . : . : . :
rJMFF001B23+ CCTGAGCTGTGTTTTTG
rJMSF022D04+ CCTGAGCTGTGTTTTTG
rJMFF022F22+ CCTGAGCTGTGTTTTTG
rJMFF024M22+ CCTGAGCTGTGTTTTTGCCTGTAGCATTGAGTTCTATCTGACTCGTAAAAGTTGCTTGGT
rJMSF007N08+ CCTGAGCTGTGTTTTTGCCTGTAGCATTGAGTTCTATCTGACTCGTAAAAGTTGCTTGGT
____________________________________________________________
consensus CCTGAGCTGTGTTTTTGCCTGTAGCATTGAGTTCTATCTGACTCGTAAAAGTTGCTTGGT
. : . : . : . : . : . :
rJMFF024M22+ GAGAGTTGTTCACAGGGGGCGTAAAGCATATATATATGTTCTAATATGCTATTCTGGGGA
rJMSF007N08+ GAGAGTTGTTCACAGGGGGCGTAAAGCATATATATATGTTCTAATATGCTATTCTGGGGA
____________________________________________________________
consensus GAGAGTTGTTCACAGGGGGCGTAAAGCATATATATATGTTCTAATATGCTATTCTGGGGA
. : . : . : . : . : . :
rJMFF024M22+ GAGAATAACTTCACGGATTTGGTAAACCTTGGCCAAGGTGATGGAACACTTCTTTTTTAT
rJMSF007N08+ GAGAATAACTTCACGGATTTGGTAAACCTTGGCCAAGGTGATGGAACACTTCTTTTTTAT
____________________________________________________________
consensus GAGAATAACTTCACGGATTTGGTAAACCTTGGCCAAGGTGATGGAACACTTCTTTTTTAT
. : . : . : . : . : . :
rJMFF024M22+ AGCATCATATCGAATGTGTTTAACGCGTGGATGCAAAGGGGTGTTGAGACTTTAGCAGGC
rJMSF007N08+ AGCATCATATCGAATGTGTTTAACGCGTGGATGCAAAGGGGTGTTGAGACTTTAGCAGGC
____________________________________________________________
consensus AGCATCATATCGAATGTGTTTAACGCGTGGATGCAAAGGGGTGTTGAGACTTTAGCAGGC
. : . : . : . : . : . :
rJMFF024M22+ AGCATGTTTTGGTCTTAGAATGGGTTAAAAATAAAATGACTATTGAATGAAGCCAGTAA
rJMSF007N08+ AGCATGTTTTGGTCTTAGAATGGGTTAAAAATAAAATGACTATTGAATGAAGCCAGTAAT
____________________________________________________________
consensus AGCATGTTTTGGTCTTAGAATGGGTTAAAAATAAAATGACTATTGAATGAAGCCAGTAAT
. : . : . : . : . : . :
rJMSF007N08+ GAGAGGTTTTTACTTTTTAGTAGAAGTTTCAAGTTACCAGCTTCCTAGTCCTAAATATAT
____________________________________________________________
consensus GAGAGGTTTTTACTTTTTAGTAGAAGTTTCAAGTTACCAGCTTCCTAGTCCTAAATATAT
. : . : . : . : . : . :
rJMSF007N08+ GTTGCAGCTTCAGCTTGGTACTTCTTGTGTAACTCTTTCTGTAAATGGCCTTAAAAGGCC
____________________________________________________________
consensus GTTGCAGCTTCAGCTTGGTACTTCTTGTGTAACTCTTTCTGTAAATGGCCTTAAAAGGCC