| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005G16 | Sequence | 353 | 000877 (4) | ref|XP_009797306.1| | 1e-42 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv | 415 | 011245 (4) | ref|XP_009797306.1| | 7e-09 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv |
| JMSF017J15 | Sequence | 523 | 000877 (4) | ref|XP_009797306.1| | 6e-65 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv | 796 | 011245 (4) | ref|XP_009632053.1| | 9e-119 | PREDICTED: probable sphingolipid transporter spinster homolog 2, partial [Nicot |
| JMSF036N19 | Sequence | 642 | 000877 (4) | ref|XP_009797306.1| | 3e-95 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv | 643 | 011245 (4) | ref|XP_009797306.1| | 2e-47 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv |
| JMSF040H11 | Sequence | 671 | 000877 (4) | ref|XP_009797306.1| | 1e-95 | PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana sylv | 925 | 011245 (4) | ref|XP_009632053.1| | 3e-96 | PREDICTED: probable sphingolipid transporter spinster homolog 2, partial [Nicot |
This contig is upended
. : . : . : . : . : . :
rJMSF040H11+ TGAGAGTTTTGCCAGAT
____________________________________________________________
consensus TGAGAGTTTTGCCAGAT
. : . : . : . : . : . :
rJMSF017J15+ TGAAAGGGTTTATGTTGTGAATGTGCTAGGATATATAGCGTAT
rJMSF040H11+ ATGAAATCTCTTTTGGTTGAAAGGGTTTATGTTGTGAATGTGCTAGGATATATAGCGTAT
____________________________________________________________
consensus ATGAAATCTCTTTTGGTTGAAAGGGTTTATGTTGTGAATGTGCTAGGATATATAGCGTAT
. : . : . : . : . : . :
rJMSF017J15+ AATTTTGTAATAGGTGCATACTCTTATTGGGGACCAAAGGCTGGTTACAGCATATATCAT
rJMSF040H11+ AATTTTGTAATAGGTGCATACTCTTATTGGGGACCAAAGGCTGGTTACAGCATATATCAT
____________________________________________________________
consensus AATTTTGTAATAGGTGCATACTCTTATTGGGGACCAAAGGCTGGTTACAGCATATATCAT
. : . : . : . : . : . :
rJMSF017J15+ ATGAGCAATGCAGATTTGCTCTTTGGAGGAGTTACAATTGTATGTGGAATATTTGGATCA
rJMSF040H11+ ATGAGCAATGCAGATTTGCTCTTTGGAGGAGTTACAATTGTATGTGGAATATTTGGATCA
____________________________________________________________
consensus ATGAGCAATGCAGATTTGCTCTTTGGAGGAGTTACAATTGTATGTGGAATATTTGGATCA
. : . : . : . : . : . :
rJMSF017J15+ CTAGCCGGTGGCTATGTTTTGGATCTCATGAATTCTACACTAACTAATGCTTTCAAGCTT
rJMSF040H11+ CTAGCCGGTGGCTATGTTTTGGATCTCATGAATTCTACACTAACTAATGCTTTCAAGCTT
____________________________________________________________
consensus CTAGCCGGTGGCTATGTTTTGGATCTCATGAATTCTACACTAACTAATGCTTTCAAGCTT
. : . : . : . : . : . :
rJMSF017J15+ CTGTCTGTTGCAACATTTTTCGGGGCGATATTTTGCTTTGCTGCCTTTTGCTTTAAAAGC
rJMSF040H11+ CTGTCTGTTGCAACATTTTTCGGGGCGATATTTTGCTTTGCTGCCTTTTGCTTTAAAAGC
rJMSF036N19+ AAAGC
____________________________________________________________
consensus CTGTCTGTTGCAACATTTTTCGGGGCGATATTTTGCTTTGCTGCCTTTTGCTTTAAAAGC
. : . : . : . : . : . :
rJMSF017J15+ CTATATGCTTTTATAGTTCTGTTTGCGATTGGAGAACTGCTCGTGTTTGCCACTCAGGGT
rJMSF040H11+ CTATATGCTTTTATAGTTCTGTTTGCGATTGGAGAACTGCTCGTGTTTGCCACTCAGGGT
rJMSF036N19+ CTATATGCTTTTATAGTTCTGTTTGCGATTGGAGAACTGCTCGTGTNTGCCACTCAGGGT
____________________________________________________________
consensus CTATATGCTTTTATAGTTCTGTTTGCGATTGGAGAACTGCTCGTGTTTGCCACTCAGGGT
. : . : . : . : . : . :
rJMSF017J15+ CCCGTAAATTATGTCTGTCTACATAGCGTCAAGCCAAGTTTGAGACCATTATCCATGGCT
rJMSF040H11+ CCCGTAAATTATGTCTGTCTACATAGCGTCAAGCCAAGTTTGAGACCATTATCCATGGCT
rJMSF036N19+ CCCGTNANTTATGTCTGTCTACATAGCGTCAAGCCAAGTTTGAGACCATTATCCAT-GCT
____________________________________________________________
consensus CCCGTAAATTATGTCTGTCTACATAGCGTCAAGCCAAGTTTGAGACCATTATCCATGGCT
. : . : . : . : . : . :
rJMSF017J15+ ATATCTACTGTCTCGATTCACATATTTGGAGACGTTCCTTCATCTCCTCTTGTCGGGGTT
rJMSF040H11+ ATATCTACTGTCTCGATTCACATATTTGGAGACGTTCCTTCATCTCCTCTTGTCGGGGTT
rJMSF036N19+ ATATCTACTGTCTCGATTCACATATTNGGAGACGTTCCTTCATCTCCTCTTGTCGGGGTT
____________________________________________________________
consensus ATATCTACTGTCTCGATTCACATATTTGGAGACGTTCCTTCATCTCCTCTTGTCGGGGTT
. : . : . : . : . : . :
rJMSF017J15+ CTCCAGGATCATATAAACGACTGGAGAATCAGCGCTTTGATCTTGACGTCTGTTCTGTTT
rJMSF040H11+ CTCCAGGATCATATAAACGACTGGAGAATCAGCGCTTTGATCTTGACGTCTGTTCTGTTT
rJMSF036N19+ CTCCAGGATCATATAAACGACTGGAGAATCAGCGCTTTGATCTNGACGTCTGTTCTGTTT
____________________________________________________________
consensus CTCCAGGATCATATAAACGACTGGAGAATCAGCGCTTTGATCTTGACGTCTGTTCTGTTT
. : . : . : . : . : . :
rJMSF017J15+ CTGGCATCCGGAATATGGTTCATAGGGATCTTTCTTCACAGTGTTGACAGATTCAATGAA
rJMSF040H11+ CT-GCATCCGGAATATGGTTCATAGGGATCTTTCTTCACAGTGTTGACAGATTCAATGAA
rJMSF036N19+ CTGGCATCCGGAATATGGTTCATAGGGATCTTTCTTCACAGTGTTGACAGATTCAATGAA
rJMSF005G16+ CATCCGGAATATGGTTCATAGGGATCTTTCTTCACAGTGTTGACATATTCAATGAA
____________________________________________________________
consensus CTGGCATCCGGAATATGGTTCATAGGGATCTTTCTTCACAGTGTTGACAGATTCAATGAA
. : . : . : . : . : . :
rJMSF017J15+ GATAGTGAGCATTCAATCCCCATACCTGATAGATCAAGCACAACACCACTCCTTGAGGAA
rJMSF040H11+ GATAGTGAGCATTCAATCCCCATACCTGATAGATCAAGCACAACACCACTCCTTGAGGAA
rJMSF036N19+ GATAGTGAGCATTCAATCCCCATACCTGATAGATCAAGCACAACACCACTCCTTGAGGAA
rJMSF005G16+ GATAGTGAGCATTCAATCCCCATACCTGATAGATCAAGCACAACACCACTCCNTGAGGAA
____________________________________________________________
consensus GATAGTGAGCATTCAATCCCCATACCTGATAGATCAAGCACAACACCACTCCTTGAGGAA
. : . : . : . : . : . :
rJMSF017J15+ AATAGTGTATCATCTGCATAGCCATATCTGCATTGCAGGAAGAACAGACAAGCAAACATG
rJMSF040H11+ AATAGTGTATCATCTGCATAGCCATATCTGCATTGCAGGAAGAACAGACAAGCAAACATG
rJMSF036N19+ AATAGTGTATCATCTGCATAGCCATATNTGCATTGCAGGAAGAACAGACAAGCAAACATG
rJMSF005G16+ AATAGTGTATCATCTGCATAGCCATATCTGCATTGCAGGAAGAATAGACAAGCAAACATG
____________________________________________________________
consensus AATAGTGTATCATCTGCATAGCCATATCTGCATTGCAGGAAGAACAGACAAGCAAACATG
. : . : . : . : . : . :
rJMSF017J15+ CTTTCAATGTTTATCACGTGTAAATACTGTTATTTTAGTGTTGTATTTGTTGATTATAGT
rJMSF040H11+ CTTTCAATGTTTATCACGTGTAAATACTGTTATTTTAGTGTTGTATTTGTTGATTATAGT
rJMSF036N19+ CTTTCAATGTTTATCACGTGTAAATACTGTTANTTTAGTGTTGTATTTGTTGANTATAGT
rJMSF005G16+ CTTTCAATGTTTATCACGTGTAAATACTGTTATTTTAGTGTTGTATTTGTTGATTATAGT
____________________________________________________________
consensus CTTTCAATGTTTATCACGTGTAAATACTGTTATTTTAGTGTTGTATTTGTTGATTATAGT
. : . : . : . : . : . :
rJMSF017J15+ GAGAACTGAGAAGAAGCTTACAAGATT
rJMSF040H11+ GAGAACTGAGAAGAAGCTTACAAGATTCAAGCTATGGTTTCAACAGAAATACAACTTCCA
rJMSF036N19+ GAGANCTGAGAAGAAGCTTACAAGATTCAAGCTATGGTTTCAACAGAAATNCAACTTCCA
rJMSF005G16+ GAGAACTGAGAAGAAGCTTACAAGATTCAAGCTATGGTTTCAACAGAAATACAACTTCCA
____________________________________________________________
consensus GAGAACTGAGAAGAAGCTTACAAGATTCAAGCTATGGTTTCAACAGAAATACAACTTCCA
. : . : . : . : . : . :
rJMSF040H11+ TTCATTTCATTGAGAAAAATAGTTCTANCTGTGTATGTACATCTATGTATTATCAATAGG
rJMSF036N19+ TTCATTTCATTGAGAAAAATAGTTCTACCTGTGTATGTACATCTATGTATTATCAATAGG
rJMSF005G16+ TTCATTTCATTGAGAAAAATAGTTCTA-CTGTGTATGTACATCTATGTATTATCAATAGG
____________________________________________________________
consensus TTCATTTCATTGAGAAAAATAGTTCTACCTGTGTATGTACATCTATGTATTATCAATAGG
. : . : . : . : . : . :
rJMSF040H11+ AAAATA
rJMSF036N19+ AAAATA
rJMSF005G16+ AAAATAGCTAGTGTGTACTCCCACTTTATACTCCCAACTTGTATTCCACACATGAAATCT
____________________________________________________________
consensus AAAATAGCTAGTGTGTACTCCCACTTTATACTCCCAACTTGTATTCCACACATGAAATCT