Contig 011244:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF004J04-                                                  GGGCAACAACTCAACAATGGG
JMSF023I22-                                                      AACAACTCAACAATGGG
                      ____________________________________________________________
consensus                                                    GGGCAACAACTCAACAATGGG
 
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JMSF004J04-           AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
JMSF023I22-           AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
                      ____________________________________________________________
consensus             AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
 
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JMSF004J04-           CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
JMSF023I22-           CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
                      ____________________________________________________________
consensus             CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
 
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JMSF004J04-           CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
JMSF023I22-           CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
                      ____________________________________________________________
consensus             CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
 
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JMSF004J04-           TCTCTCTTCAAACCACCCACT                                       
JMSF023I22-           TCTCTCTTCAAACCACCCACTTCAAGCCCTTGTACAATTTCAAGACGACGTTGTTGAAGG
                      ____________________________________________________________
consensus             TCTCTCTTCAAACCACCCACTTCAAGCCCTTGTACAATTTCAAGACGACGTTGTTGAAGG
 
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JMSF023I22-           AACTGACGAAGATACCGATGTTGATGAAATTGAGGAACTTGAACCCGAAGCAGTAGCGGT
                      ____________________________________________________________
consensus             AACTGACGAAGATACCGATGTTGATGAAATTGAGGAACTTGAACCCGAAGCAGTAGCGGT
 
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JMSF023I22-           TACAGTTACCACAGAGTCTTCCGAAGCTCAGAGGCTGCATTCGAAGCTTCAGAGACTCAC
rJMSF023I22+                                               CATTCGGAGCTTCAGAGACTCAC
                      ____________________________________________________________
consensus             TACAGTTACCACAGAGTCTTCCGAAGCTCAGAGGCTGCATTCGGAGCTTCAGAGACTCAC
 
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JMSF023I22-           AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
rJMSF023I22+          AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
                      ____________________________________________________________
consensus             AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
 
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JMSF023I22-           CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
rJMSF023I22+          CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
                      ____________________________________________________________
consensus             CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
 
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JMSF023I22-           TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
rJMSF023I22+          TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
                      ____________________________________________________________
consensus             TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
 
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JMSF023I22-           TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
rJMSF023I22+          TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
                      ____________________________________________________________
consensus             TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
 
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JMSF023I22-           CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGA               
rJMSF023I22+          CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGAGAAGAAAAAGCTTGT
                      ____________________________________________________________
consensus             CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGAGAAGAAAAAGCTTGT
 
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rJMSF023I22+          TCAAAGAGCTATTTTGAAAAAACAAATGCTGAATAAAGACAAGAAACCAATGCAGGTTAA
                      ____________________________________________________________
consensus             TCAAAGAGCTATTTTGAAAAAACAAATGCTGAATAAAGACAAGAAACCAATGCAGGTTAA
 
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rJMSF023I22+          GGGACAGGGTAAGGGACTAATTCCAAGACCATCTAACCGTGGTCGCAGAGGGGGTAGCCG
                      ____________________________________________________________
consensus             GGGACAGGGTAAGGGACTAATTCCAAGACCATCTAACCGTGGTCGCAGAGGGGGTAGCCG
 
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rJMSF023I22+          ATTTTCTCTAGATTCAGCCCAAAAATGAATTTTGAACTTTTGATACCTCATCGTTCATCA
rJMSF004J04+                           CCCAAAAATGANTTTTGAACTTTTGATACCTCATCGTTCATCA
                      ____________________________________________________________
consensus             ATTTTCTCTAGATTCAGCCCAAAAATGAATTTTGAACTTTTGATACCTCATCGTTCATCA
 
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rJMSF023I22+          TAT-GGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
rJMSF004J04+          TATGGGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
                      ____________________________________________________________
consensus             TATGGGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
 
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rJMSF023I22+          TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
rJMSF004J04+          TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
                      ____________________________________________________________
consensus             TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
 
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rJMSF023I22+          GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGATTAATATGT
rJMSF004J04+          GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGANTAATATGT
                      ____________________________________________________________
consensus             GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGATTAATATGT
 
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rJMSF023I22+          TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGACC
rJMSF004J04+          TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGA-C
                      ____________________________________________________________
consensus             TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGACC
 
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rJMSF023I22+          CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGC                       
rJMSF004J04+          CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGCTGCGAGGGAAACTCGGAAATGTT
                      ____________________________________________________________
consensus             CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGCTGCGAGGGAAACTCGGAAATGTT