Contig 011242:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003N10Sequence338003888 (4)ref|XP_009786487.1|3e-29PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR541011242 (2)
JMSF048K08Sequence607003888 (4)ref|XP_009786487.1|2e-40PREDICTED: auxin response factor 1 [Nicotiana sylvestris] ref|XP_009786488.1| PR514011242 (2)

Alignment

This contig is upended


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rJMSF048K08+                                                            TGGNNTAANA
                      ____________________________________________________________
consensus                                                               TGGNNTAANA
 
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rJMSF048K08+          CGNGGGCCCNGTTNCCTATGTACCCNNAATGNCCNGGGGNGAAAAAATAATAATGNGGAT
rJMSF003N10+             GGGCCCNGTTACCTATGTACCCNTAATGGCCCGGGGNGAAAAAATAATAATGNGGAT
                      ____________________________________________________________
consensus             CGNGGGCCCNGTTACCTATGTACCCNTAATGGCCCGGGGNGAAAAAATAATAATGNGGAT
 
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rJMSF048K08+          TGGGGGGGGGGGGTGGAATGGACTTCGGATTTCAGTATCCTTGGTGATTTTGTTTTTGGC
rJMSF003N10+          TGGGGGGGGGGGGTGGAATGGACTTCGGATTTCAGTATCCTTGGTGATTTTGTTTTTGGC
                      ____________________________________________________________
consensus             TGGGGGGGGGGGGTGGAATGGACTTCGGATTTCAGTATCCTTGGTGATTTTGTTTTTGGC
 
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rJMSF048K08+          TACAAGTGAGGGCATGCCCGACGCATAACCCATGCTTTTGAATGGCCAAGTGCATATAGT
rJMSF003N10+          TACAAGTGAGGGCATGCCCGACGCATAACCCATGCTTTTGAATGGCCAAGTGCATTTAGT
                      ____________________________________________________________
consensus             TACAAGTGAGGGCATGCCCGACGCATAACCCATGCTTTTGAATGGCCAAGTGCATTTAGT
 
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rJMSF048K08+          TGCCAGGCATGGTCTAAAGTATGGTGGCGGGACAAAAGTGCAGCAAAGCGTTTCAAGGTA
rJMSF003N10+          TGCCAGGCATGGTCTAAAGTATGGTGGCGGGACAAAAGTGCAGCAAAGCGTTTCAAGGTA
                      ____________________________________________________________
consensus             TGCCAGGCATGGTCTAAAGTATGGTGGCGGGACAAAAGTGCAGCAAAGCGTTTCAAGGTA
 
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rJMSF048K08+          GGATGGGGTTCCATACTGAGTGGATAACGGTTAAGATCTTAGTATTATCTAGCGGCATTA
rJMSF003N10+          GGATGGGGTTCCATACTGAGTGGATAACGGTTAAGATCTTAGTATTATCTAGCGGCATTA
                      ____________________________________________________________
consensus             GGATGGGGTTCCATACTGAGTGGATAACGGTTAAGATCTTAGTATTATCTAGCGGCATTA
 
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rJMSF048K08+          TTATCTTATTTTTATGATTTTGTCTTATCTGACGGGAAATCTTGTAATGGTTGCTTGTTT
rJMSF003N10+          TTATCTTATTTTTATGATTTTGTCTGATCTGACGGGAAATCTTGTAATGGTTGCTTGTTT
                      ____________________________________________________________
consensus             TTATCTTATTTTTATGATTTTGTCTTATCTGACGGGAAATCTTGTAATGGTTGCTTGTTT
 
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rJMSF048K08+          GAAAACCTTAGAGAATAGATTGATGAAAAAGGTTTGTTGTGCAGTAGTACCGGCCGCCTC
rJMSF003N10+          GAAAACCTTAGAGAATAGATTGATGAAAAAGGTTTGTTGTGCAGTAGTACCGGCCGCCTC
                      ____________________________________________________________
consensus             GAAAACCTTAGAGAATAGATTGATGAAAAAGGTTTGTTGTGCAGTAGTACCGGCCGCCTC
 
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rJMSF048K08+          TAATGGGGAGATGAACAGAGACTATTCTTCATCCTTTTTCCCTTGTCATTTTTCCTTTAG
rJMSF003N10+          TAATGGGGAGATGAACAGAGACTATTCTTCATCCTTTTTCCCTTGTCATTTTTCCTTTAG
                      ____________________________________________________________
consensus             TAATGGGGAGATGAACAGAGACTATTCTTCATCCTTTTTCCCTTGTCATTTTTCCTTTAG
 
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rJMSF048K08+          CCATTTTGTATAAAACCATGTCAT                                    
rJMSF003N10+          CCATTTTGTATAAAACCATGTCATGATACAGATGGCTTTTGTATATATAATGTAAAAGTG
                      ____________________________________________________________
consensus             CCATTTTGTATAAAACCATGTCATGATACAGATGGCTTTTGTATATATAATGTAAAAGTG