| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007K01 | Sequence | 512 | 011239 (11) | ref|XP_011082722.1| | 6e-64 | PREDICTED: RNA exonuclease 4 [Sesamum indicum] | 737 | 011239 (11) | ref|XP_011082722.1| | 6e-39 | PREDICTED: RNA exonuclease 4 [Sesamum indicum] |
| JMFF008I02 | Sequence | 567 | 011239 (11) | ref|XP_011082722.1| | 4e-76 | PREDICTED: RNA exonuclease 4 [Sesamum indicum] | 642 | 011239 (11) | emb|CDP05970.1| | 7e-32 | unnamed protein product [Coffea canephora] |
| JMFF046E19 | Sequence | 642 | 011239 (11) | ref|XP_011082722.1| | 9e-78 | PREDICTED: RNA exonuclease 4 [Sesamum indicum] | 531 | 011239 (11) | ref|XP_004251876.1| | 2e-05 | PREDICTED: RNA exonuclease 4 [Solanum lycopersicum] |
| JMSF002A08 | Sequence | 247 | 011239 (11) | ref|XP_009595826.1| | 2e-06 | PREDICTED: RNA exonuclease 4 isoform X1 [Nicotiana tomentosiformis] | 652 | 011239 (11) | ref|XP_004251876.1| | 3e-20 | PREDICTED: RNA exonuclease 4 [Solanum lycopersicum] |
| JMSF003A08 | Sequence | 245 | 011239 (11) | ref|XP_009595826.1| | 2e-06 | PREDICTED: RNA exonuclease 4 isoform X1 [Nicotiana tomentosiformis] | 751 | 011239 (11) | gb|KHG18277.1| | 7e-33 | RNA exonuclease 4 [Gossypium arboreum] |
| JMSF030C20 | Sequence | 689 | 017861 | ref|XP_007202091.1| | 1e-05 | hypothetical protein PRUPE_ppa007474mg [Prunus persica] gb|EMJ03290.1| hypotheti | 738 | 011239 (11) | ref|XP_004251876.1| | 3e-72 | PREDICTED: RNA exonuclease 4 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF003A08- GCGAAAGGCGGAAGAACAGAAGCAGG
JMSF002A08- GAAAGGCGGAAGAACAGAAGCAGG
JMFF007K01- GAAAGGCGGAAGAACAGAAGCAGG
JMFF008I02- GAAAGGCGGAAGAACAGAAGCAGG
JMFF046E19- AGAAGCAGG
____________________________________________________________
consensus GCGAAAGGCGGAAGAACAGAAGCAGG
. : . : . : . : . : . :
JMSF003A08- GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
JMSF002A08- GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
JMFF007K01- GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
JMFF008I02- GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
JMFF046E19- GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
____________________________________________________________
consensus GTTGAGGAGGGAGGCATGGCCAGTCAGCTCAAAAACCCTAAAAAGCATCCCAAGCTAAAC
. : . : . : . : . : . :
JMSF003A08- CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
JMSF002A08- CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
JMFF007K01- CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
JMFF008I02- CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
JMFF046E19- CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
____________________________________________________________
consensus CCCAACTGGGCTCAACTCTGTGAAAAACTCAAAATCAATGGCTCAAAGAAACCGCTCATA
. : . : . : . : . : . :
JMSF003A08- AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
JMSF002A08- AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
JMFF007K01- AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
JMFF008I02- AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
JMFF046E19- AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
____________________________________________________________
consensus AAGGCTTCACCAGCATCGGAACCAGAAACCCAGAGCACCATATTGGGGAAGCGAAAAGAG
. : . : . : . : . : . :
JMSF003A08- AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCT
JMSF002A08- AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCTTT
JMFF007K01- AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCTTTGATTCCTACCTCATCTGAT
JMFF008I02- AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCTTTGATTCCTACCTCATCTGAT
JMFF046E19- AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCTTTGATTCCTACCTCATCTGAT
____________________________________________________________
consensus AGGCCCTATGAACAAACCGATGACTCAAAGCCCAACCCTTTGATTCCTACCTCATCTGAT
. : . : . : . : . : . :
JMFF007K01- TGCAGTGCTACAGATGTGATAGCCATGGATTGTGAAATGGTAGGTGTCAGCCCTGTTGGG
JMFF008I02- TGCAGTGCTACAGATGTGATAGCCATGGATTGTGAAATGGTAGGTGTCAGCCCTGTTGGG
JMFF046E19- TGCAGTGCTACAGATGTGATAGCCATGGATTGTGAAATGGTAGGTGTCAGCCCTGTTGGG
____________________________________________________________
consensus TGCAGTGCTACAGATGTGATAGCCATGGATTGTGAAATGGTAGGTGTCAGCCCTGTTGGG
. : . : . : . : . : . :
JMFF007K01- AACAAGAGTGCACTTGGGCGAGTCACTTTGGTAAACAAATGGGGAAATGTTATATATGAT
JMFF008I02- AACAAGAGTGCACTTGGGCGAGTCACTTTGGTAAACAAATGGGGAAATGTTATATATGAT
JMFF046E19- AACAAGAGTGCACTTGGGCGAGTCACTTTGGTAAACAAATGGGGAAATGTTATATATGAT
rJMSF030C20+ AATGTTATATATGAT
____________________________________________________________
consensus AACAAGAGTGCACTTGGGCGAGTCACTTTGGTAAACAAATGGGGAAATGTTATATATGAT
. : . : . : . : . : . :
JMFF007K01- GAATATGTGCGCCCAATGGAACGTGTTGTTGACTTCCGCACCAAAATTAGTGGAATCCGA
JMFF008I02- GAATATGTGCGCCCAATGGAACGTGTTGTTGACTTCCGCACCAAAATTAGTGGAATCCGA
JMFF046E19- GAATATGTGCGCCCAATGGAACGTGTTGTTGACTTCCGCACCAAAATTAGTGGAATCCGA
rJMSF030C20+ GAATATGTGCGCCCAATGGAACGTGTTGTTGACTTCCGCACCAAAATTAGTGGAATCCGA
____________________________________________________________
consensus GAATATGTGCGCCCAATGGAACGTGTTGTTGACTTCCGCACCAAAATTAGTGGAATCCGA
. : . : . : . : . : . :
JMFF007K01- CCTCATCACTTGAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
JMFF008I02- CCTCATCACTTGAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
JMFF046E19- CCTCATCACTTGAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
rJMSF030C20+ CCTCATCACTTGAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
rJMFF007K01+ GAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
____________________________________________________________
consensus CCTCATCACTTGAAGAAAGCAAAGAATTTCAATGCTGTTCAGAAGGAAGTTGCAGAGTTG
. : . : . : . : . : . :
JMFF007K01- ATTAAAG
JMFF008I02- ATTAAAGGAAAGATTCTTGTTGGCCATGCTCTGCACAACGATCTAAAAGCATTGCTATTA
JMFF046E19- ATTAAAGGAAAGATTCTTGTTGGCCATGCTCTGCACAACGATCTANAAGCATTGCTATTA
rJMSF030C20+ ATTAAAGGAAAGATTCTTGTTGGCCATGCTCTGCACAACGATCTAAAAGCATTGCTATTA
rJMFF008I02+ AAAAGCATTGCTATTA
rJMFF007K01+ ATTAAAGGAAAGATTCTTGTTGGCCATGCTCTGCACAACGATCTAAAAGCATTGCTATTA
rJMSF003A08+ TGCACAACGATCTAAAAGCATTGCTATTA
____________________________________________________________
consensus ATTAAAGGAAAGATTCTTGTTGGCCATGCTCTGCACAACGATCTAAAAGCATTGCTATTA
. : . : . : . : . : . :
JMFF008I02- AG
JMFF046E19- AGTCACCCGAAGAACGATATTCGTGATACTTCTGAGTTTCACCCTTTCCTAAA
rJMSF030C20+ AGTCACCCGAAGAACGATATTCGTGATACTTCTGAGTTTCACCCTTTCCTAAAAGAAGGG
rJMFF008I02+ AGTCACCCGAAGAACGATATTCGTGATACTTCTGAGTTTCACCCTTTCCTAAAAGAAGGG
rJMFF007K01+ AGTCACCCGAAGAACGATATTCGTGATACTTCTGAGTTTCACCCTTTCCTAAAAGAAGGG
rJMSF002A08+ TCCTAAANGAAGGG
rJMSF003A08+ AGTCACCCGAAGAACGATATTCGTGATACTTNTGAGTTTCACCCTTTCCTAAAAGAAGGG
____________________________________________________________
consensus AGTCACCCGAAGAACGATATTCGTGATACTTCTGAGTTTCACCCTTTCCTAAAAGAAGGG
. : . : . : . : . : . :
rJMSF030C20+ CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAAATTCTAGGTGCAGATATTCAAAACGGG
rJMFF008I02+ CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAAATTCTAGGTGCAGATATTCAAAACGGG
rJMFF007K01+ CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAANTTCTAGGTGCAGATATTCAAAACGGG
rJMSF002A08+ CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAAATTCTAGGTGCAGATATTCAAAACGGG
rJMSF003A08+ CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAAATTCTAGGTGCAGATATTCAAAACGGG
____________________________________________________________
consensus CGTAGCCGTGCCCTTAGGCTTCTTGCAGCTGAAATTCTAGGTGCAGATATTCAAAACGGG
. : . : . : . : . : . :
rJMSF030C20+ GAGCACTGCCCGGTAGGAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
rJMFF046E19+ TGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCATTACGTGAAACACAGAAAA
rJMFF008I02+ GAGCACTGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
rJMFF007K01+ GAGCACTGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
rJMSF002A08+ GAGCACTGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
rJMSF003A08+ GAGCACTGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
____________________________________________________________
consensus GAGCACTGCCCGGTAGAAGATGCCCGTGCTGCAATGATGCTATACGTGAAACACAGAAAA
. : . : . : . : . : . :
rJMSF030C20+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
rJMFF046E19+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
rJMFF008I02+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
rJMFF007K01+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
rJMSF002A08+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
rJMSF003A08+ GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
____________________________________________________________
consensus GTATGGGAAAAACACATCAAGGATTTCATGAAGCTGAAGAAGAAGCAGGAAAAAAGGAAA
. : . : . : . : . : . :
rJMSF030C20+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
rJMFF046E19+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
rJMFF008I02+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
rJMFF007K01+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
rJMSF002A08+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
rJMSF003A08+ CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
____________________________________________________________
consensus CATAAAAAGAAGGCGAGAGGTGATGAAGGTCAAGTAGCACATGAATGAATAATGCCGGGG
. : . : . : . : . : . :
rJMSF030C20+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
rJMFF046E19+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
rJMFF008I02+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
rJMFF007K01+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
rJMSF002A08+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
rJMSF003A08+ AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
____________________________________________________________
consensus AAGCCTCTTACTAACGTTGTTGTATGTTGGAAGTTACCATTTTCACCCTGGAAAGAAATT
. : . : . : . : . : . :
rJMSF030C20+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
rJMFF046E19+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
rJMFF008I02+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
rJMFF007K01+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
rJMSF002A08+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
rJMSF003A08+ CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
____________________________________________________________
consensus CTTTCTGCTAAGCAGGGGGGGGAGTAAAGGAATCTGATTGAAAAGAGAAACCGGGGAGCA
. : . : . : . : . : . :
rJMSF030C20+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
rJMFF046E19+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
rJMFF008I02+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
rJMFF007K01+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
rJMSF002A08+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
rJMSF003A08+ GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
____________________________________________________________
consensus GGTAAGGCTGCTTGCTGCTACTTCTTTCGGTTTCCAATCTTTCGATCCAGTGGATGAAAT
. : . : . : . : . : . :
rJMSF030C20+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACC
rJMFF046E19+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
rJMFF008I02+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
rJMFF007K01+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
rJMSF002A08+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
rJMSF003A08+ TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
____________________________________________________________
consensus TGCTTCATTTGACATGAAAATGTACTGTGTACGATGTAGTGTTTACCTGTCACACAGGTT
. : . : . : . : . : . :
rJMFF046E19+ AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
rJMFF008I02+ AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
rJMFF007K01+ AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
rJMSF002A08+ AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
rJMSF003A08+ AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
____________________________________________________________
consensus AATTCATGGGAAAGAAGGAAAATGCTACAATGCCCTACATTTTAAGGTTATAACCAGAAA
. : . : . : . : . : . :
rJMFF046E19+ TTCTTGTTATACTGTACTATAAAA
rJMFF008I02+ TTCTTGTTATACTGTACTATAAAAGT
rJMFF007K01+ TTCTTGTTATACTGTACTATAAAAGT
rJMSF002A08+ TTCTTGTTATACTGTACTATAAAACGTAGAGTGCTATTACACCCAGTAGNTTTCTCCATG
rJMSF003A08+ TTCTTGTTATACTGTACTATAAAA-GTAGAGTGCTATTACACCCAGTAGTTTTCTCCATG
____________________________________________________________
consensus TTCTTGTTATACTGTACTATAAAAGTTAGAGTGCTATTACACCCAGTAGTTTTCTCCATG
. : . : . : . : . : . :
rJMSF002A08+ AATTGAAGCAGTTGGTGCTTTGACTTTCTTGTCTTTCC
rJMSF003A08+ AATTGAAGCAGTTGGTGCTTTGACTTTCTTGTCTTTCCTCCTGTAGTTATGCTACTGCTG
____________________________________________________________
consensus AATTGAAGCAGTTGGTGCTTTGACTTTCTTGTCTTTCCTCCTGTAGTTATGCTACTGCTG