Contig 011237:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          TTCTGCAGCCAAAAGAATATAANTTGGCTTATGGCCGAGACCGGTTCAAATGTTCTAAGC
                      ____________________________________________________________
consensus             TTCTGCAGCCAAAAGAATATAANTTGGCTTATGGCCGAGACCGGTTCAAATGTTCTAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          AAAGTTGATGATAAGTGTGAGCTCGCCCCTTCCAATGGGATGATGGTAAAGTATCAGCCG
rJMSF002M13+           AAGTTGATGATAAGTGTGAGCTCGCCCCTTCCAATGGGATGATGGTAAAGTATCAGCCG
                      ____________________________________________________________
consensus             AAAGTTGATGATAAGTGTGAGCTCGCCCCTTCCAATGGGATGATGGTAAAGTATCAGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          CCACTACAGCATCAAGTTGCTGAGCCAATATGCAGTGACCCTACTTCAGATCCCGAGAAA
rJMSF002M13+          CCACTACAGCATCAAGTTGCTGAGCCAATATGCAGTGACCCTACTTCAGATCCCGAGAAA
                      ____________________________________________________________
consensus             CCACTACAGCATCAAGTTGCTGAGCCAATATGCAGTGACCCTACTTCAGATCCCGAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          TCTATGGAACACGATTTTTCTTCAAATGATATCGAAGAAAATGAAGAGACGGGTAGGAAT
rJMSF002M13+          TCTATGGAACACGATTTTTCTTCAAATGATATCGAAGAAAATGAAGAGACGGGTAGGAAT
                      ____________________________________________________________
consensus             TCTATGGAACACGATTTTTCTTCAAATGATATCGAAGAAAATGAAGAGACGGGTAGGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          AATGCATCAAGTGAAGAAGTTGAACATAACTCTGAGCTCACCCCATCTAATGGAATTTTA
rJMSF002M13+          AATGCATCAAGTGAAGAAGTTGAACATAACTCTGAGCTCACCCCATCTAATGGAATTTTA
                      ____________________________________________________________
consensus             AATGCATCAAGTGAAGAAGTTGAACATAACTCTGAGCTCACCCCATCTAATGGAATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          GTAAAGTATCAATCACCGACACATCAAGTTGCAGTGCCAAAATGCATTGAGCCTACTTCT
rJMSF002M13+          GTAAAGTATCAATCACCGACACATCAAGTTGCAGTGCCAAAATGCATTGAGCCTACTTCT
                      ____________________________________________________________
consensus             GTAAAGTATCAATCACCGACACATCAAGTTGCAGTGCCAAAATGCATTGAGCCTACTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          TATGCTGAGAAATCAACGGACCTGGATTTTTCTTTAGATGATATTAAAGATCTCTTCAAG
rJMSF002M13+          TATGCTGAGAAATCAACGGACCTGGATTTTTCTTTAGATGATATTAAAGATCTCTTCAAG
                      ____________________________________________________________
consensus             TATGCTGAGAAATCAACGGACCTGGATTTTTCTTTAGATGATATTAAAGATCTCTTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          AACATAGATATCTTCCCAGGGCCATTCGATGAGGGGTTTCTTCCTTCCGAAAACAGTGAT
rJMSF002M13+          AACATAGATATCTTCCCAGGGCCATTCGATGAGGGGTTTCTTCCTTCCGAAAACAGTGAT
                      ____________________________________________________________
consensus             AACATAGATATCTTCCCAGGGCCATTCGATGAGGGGTTTCTTCCTTCCGAAAACAGTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          CCGTTTTCAATTCCTGATATGCTCGACGGGGATGATGTAATGGATATGCTTTTGTCCAGC
rJMSF002M13+          CCGTTTTCAATTCCTGATATGCTCGACGGGGATGATGTAATGGATATGCTTTTGTCCAGC
                      ____________________________________________________________
consensus             CCGTTTTCAATTCCTGATATGCTCGACGGGGATGATGTAATGGATATGCTTTTGTCCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          CCAATCTCAGAAAGAGAAGAACTAGGAGACGGTATAGGTGAAGGCGGGACAACTGAAACT
rJMSF002M13+          CCAATCTCAGAAAGAGAAGAACTAGGAGACGGTATAGGTGAAGGCGGGACAACTGAAACT
                      ____________________________________________________________
consensus             CCAATCTCAGAAAGAGAAGAACTAGGAGACGGTATAGGTGAAGGCGGGACAACTGAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          CCCCCGCATACCACTCATGCAGGTAACTTTGAGGGCATGGATACGCTAACGGAACAAATG
rJMSF002M13+          CCCCCGCATACCACTCATGCAGGTAACTTTGAGGGCATGGATACGCTAACGGAACAAATG
                      ____________________________________________________________
consensus             CCCCCGCATACCACTCATGCAGGTAACTTTGAGGGCATGGATACGCTAACGGAACAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          GGTCATACAAAATTTTGATATTAGTTTCTGTGGAGACACTGTGTCATGTATTCTTTTTGG
rJMSF002M13+          GGTCATACAAAATTTTGATATTAGTTTCTGTGGAGACACTGTGTCATGTATTCTTTTTGG
                      ____________________________________________________________
consensus             GGTCATACAAAATTTTGATATTAGTTTCTGTGGAGACACTGTGTCATGTATTCTTTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040N18+          CTTCAAAGCTAGTTTTGAAGCTTGGAGGGAAATTTNGCATA                   
rJMSF002M13+          CTTCAAAGCTAGTTTTGAAGCTTGGAGGGAAATTTTGCATACATTAGTGGCCATGGTTTT
                      ____________________________________________________________
consensus             CTTCAAAGCTAGTTTTGAAGCTTGGAGGGAAATTTTGCATACATTAGTGGCCATGGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002M13+          AGGCATATTGGATTATATACACTAATATACTATTTTAACCAGAGACAGAAATGGGTTAAT
                      ____________________________________________________________
consensus             AGGCATATTGGATTATATACACTAATATACTATTTTAACCAGAGACAGAAATGGGTTAAT