Contig 011234:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039F03Sequence525009331 (4)ref|XP_009804551.1|3e-22PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris]681011234 (5)ref|XP_010654169.1|1e-19PREDICTED: mucin-12-like isoform X2 [Vitis vinifera]
JMSF002J22Sequence286017728ref|XP_004246841.1|6e-12PREDICTED: endochitinase A-like [Solanum lycopersicum]792011234 (5)emb|CAN77490.1|3e-20hypothetical protein VITISV_010725 [Vitis vinifera]
JMSF024A09Sequence664009331 (4)ref|XP_009804551.1|2e-24PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris]727011234 (5)emb|CAN77490.1|2e-20hypothetical protein VITISV_010725 [Vitis vinifera]
JMSF027H15Sequence676009331 (4)ref|XP_009804551.1|1e-24PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris]791011234 (5)ref|XP_004246841.1|1e-22PREDICTED: endochitinase A-like [Solanum lycopersicum]
JMSF035F02Sequence683009331 (4)ref|XP_009804551.1|1e-24PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris]727011234 (5)emb|CAN77490.1|2e-19hypothetical protein VITISV_010725 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF027H15+                                                 CTGATGGAAACCAAGGCATAG
rJMSF002J22+                                                         AACCCAGGCATAG
                      ____________________________________________________________
consensus                                                    CTGATGGAAACCCAGGCATAG
 
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rJMSF024A09+                                  AATCCCGAACATTAGCATTCATAGCCATTGGAGCGG
rJMSF027H15+          ATCATGTTCTCCATCTAAAGGCCCAATCCCGAACATTAGCATTCATAGCCATTGGAGCGG
rJMSF035F02+                                                     CATAGCCANTGGAGCGG
rJMSF002J22+          ATCATGTTCTCCATNTAAAGG-CCAATCCCGAACATTAGCATTCATAGCCATTGGAGCGG
                      ____________________________________________________________
consensus             ATCATGTTCTCCATCTAAAGGCCCAATCCCGAACATTAGCATTCATAGCCATTGGAGCGG
 
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rJMSF024A09+          TTCGCTTTCCAGGAGCCGAGGGTACAATAATGATGAAGATGATGTGAACCCTGTACTGAT
rJMSF027H15+          TTCGCTTTCCAGGAGCCGAGGGTACAATAATGATGAAGATGATGTGAACCCTGTACTGAT
rJMFF039F03+                             GGGTACAATAATGATGAAGATGATGTGANCCCTGTACTGAT
rJMSF035F02+          TTCGCTTTCCAGGAGCCGAGGGTACAATAATGATGAAGATGATGTGAACCCTGTACTGAT
rJMSF002J22+          TTCGCTTTCCAGGAGCCGAGGGTACAATAATGATGAAGATGATGTGAACCCTGTACTGAT
                      ____________________________________________________________
consensus             TTCGCTTTCCAGGAGCCGAGGGTACAATAATGATGAAGATGATGTGAACCCTGTACTGAT
 
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rJMSF024A09+          GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
rJMSF027H15+          GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
rJMFF039F03+          GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
rJMSF035F02+          GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
rJMSF002J22+          GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
                      ____________________________________________________________
consensus             GGGGACAAAGATGGTTGAAAGAGTAGTAAACATGAGAAAACTTGCTCCCCCCAAGCCCGA
 
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rJMSF024A09+          TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
rJMSF027H15+          TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
rJMFF039F03+          TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
rJMSF035F02+          TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
rJMSF002J22+          TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
                      ____________________________________________________________
consensus             TGACCATCAATCTAGCAGCAAAGACTCCTCCAAGAAGTCTTCCATATCTCAAAAGAGCTC
 
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rJMSF024A09+          AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
rJMSF027H15+          AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
rJMFF039F03+          AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
rJMSF035F02+          AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
rJMSF002J22+          AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
                      ____________________________________________________________
consensus             AAGCTTCGGAACATCCTTCTCTAAGAAGTCTCTGGACATGGCTATAAGACATATGGAAAT
 
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rJMSF024A09+          ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
rJMSF027H15+          ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
rJMFF039F03+          ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
rJMSF035F02+          ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
rJMSF002J22+          ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
                      ____________________________________________________________
consensus             ACGACGAAGCAGTGGTGGTAATGCAAACCGAGCAATGAAAAAGGGTTATCCAGCATCCTC
 
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rJMSF024A09+          GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
rJMSF027H15+          GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
rJMFF039F03+          GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
rJMSF035F02+          GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
rJMSF002J22+          GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
                      ____________________________________________________________
consensus             GGCCAATGGTGTTCAGGCAAACTGCAGCAGTAAGAGCAAAACAAGTAGCAATGCCAGTCC
 
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rJMSF024A09+          CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
rJMSF027H15+          CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
rJMFF039F03+          CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
rJMSF035F02+          CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
rJMSF002J22+          CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
                      ____________________________________________________________
consensus             CGAGCCCAGCATCAACAATGGCTGCCATCATGGCTACGAAAGTGAAGTGGAAGACAGTAA
 
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rJMSF024A09+          TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
rJMSF027H15+          TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
rJMFF039F03+          TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
rJMSF035F02+          TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
rJMSF002J22+          TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
                      ____________________________________________________________
consensus             TTGTGGAAGCGAAAGAGGACAACCCTCTGATCATCTGCAGCCATCAGAAAAGTAGCTTAT
 
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rJMSF024A09+          TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
rJMSF027H15+          TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
rJMFF039F03+          TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
rJMSF035F02+          TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
rJMSF002J22+          TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
                      ____________________________________________________________
consensus             TGAAATTGCAGATCAGATACACATTTCTGCAGTAAGTTATCGCTTGCCAGCATATTGCAC
 
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rJMSF024A09+          TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
rJMSF027H15+          TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
rJMFF039F03+          TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
rJMSF035F02+          TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
rJMSF002J22+          TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
                      ____________________________________________________________
consensus             TTGGATTTCGTTTTTTACAAAAATCCGGTTGTTACATTCTTTGTACTCTCTGCGTGTGTT
 
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rJMSF024A09+          GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
rJMSF027H15+          GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
rJMFF039F03+          GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
rJMSF035F02+          GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
rJMSF002J22+          GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
                      ____________________________________________________________
consensus             GTGCTACTGCTTCTGTAGCAAGAACTAGATACAGCTTGTAATTTATATGATTTTTGTGAT
 
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rJMSF024A09+          AGAGATTATAAAAACT                                            
rJMSF027H15+          AGAGATTATAAAAACTTGAACATTAATTAGCACATTAATGTTGATAAATT          
rJMFF039F03+          AGAGATTATAAAAACTTGAACATTAATTAGCACATTAATG                    
rJMSF035F02+          AGAGATTATAAAAACTTGAACATTAATTAGCACATTAATGTTGATAAATT          
rJMSF002J22+          AGAGATTATAAAAACTTGAACATTAATTAGCACATTAATGTTGATAAATTTGATGTGTAT
                      ____________________________________________________________
consensus             AGAGATTATAAAAACTTGAACATTAATTAGCACATTAATGTTGATAAATTTGATGTGTAT