| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002C20 | Sequence | 314 | 002128 (5) | emb|CDP18816.1| | 4e-24 | unnamed protein product [Coffea canephora] | 789 | 011233 (4) | ref|XP_007010830.1| | 7e-36 | Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N |
| JMSF010N19 | Sequence | 320 | 002128 (5) | emb|CDP18816.1| | 3e-23 | unnamed protein product [Coffea canephora] | 720 | 011233 (4) | ref|XP_007010828.1| | 3e-56 | Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea |
| JMSF028G03 | Sequence | 685 | 002128 (5) | ref|XP_009771507.1| | 2e-127 | PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris] | 728 | 011233 (4) | ref|XP_007010830.1| | 3e-44 | Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N |
| JMSF040L08 | Sequence | 682 | 002128 (5) | ref|XP_009771507.1| | 3e-113 | PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris] | 859 | 011233 (4) | ref|XP_007010828.1| | 1e-56 | Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea |
This contig is upended
. : . : . : . : . : . :
rJMSF010N19+ CTGGAAGCCCTTGGCTGAAGATAT
rJMSF040L08+ GACTACTGGAAGCCCTTGGCTGAAGATAT
____________________________________________________________
consensus GACTACTGGAAGCCCTTGGCTGAAGATAT
. : . : . : . : . : . :
rJMSF010N19+ GGACGAATCTGCTGGAATTGAAGCAGAATATCATCACAAAAATAATCGGGTTTATTGTTG
rJMSF040L08+ GGACGAATCTGCTGGAATTGAAGCAGAATATCATCACAAAAATAATCGGGTTTATTGTTG
____________________________________________________________
consensus GGACGAATCTGCTGGAATTGAAGCAGAATATCATCACAAAAATAATCGGGTTTATTGTTG
. : . : . : . : . : . :
rJMSF028G03+ CTGCTAGACAGGATTTGGAAGGATTTTCTCGATTTACAGAAC
rJMSF010N19+ GAAAGGTCTCCGGTTTTTCTGCTAGACAGGATTTGGAAGGATTTTCTCGATTTACAGAAC
rJMSF040L08+ GAAAGGTCTCCGG-TTTTCTGCTAGACAGGATTTGGAAGGATTTTCTCGATTTACAGAAC
rJMSF002C20+ TTACAGAAC
____________________________________________________________
consensus GAAAGGTCTCCGGTTTTTCTGCTAGACAGGATTTGGAAGGATTTTCTCGATTTACAGAAC
. : . : . : . : . : . :
rJMSF028G03+ ATGGTATTGAGGGTGTTGTGCCTGTGGAACTTTTGCCTCCAGAGGTGCGGTCAAAATATC
rJMSF010N19+ ATGGTATTGAGGGTGTTGTGCCTGTGGAACTTTTGCCTCCAGAGGTGCGGTCAAAATATC
rJMSF040L08+ ATGGTATTGAGGGTGTTGTGCCTGTGGAACTTTTGCCTCCAGAGGTGCGGTCAAAATATC
rJMSF002C20+ ATGGTATTGAGGGTGTTGTGCCTGTGGAACTTTTGCCTCCAGAGGTGCGGTCAAAATATC
____________________________________________________________
consensus ATGGTATTGAGGGTGTTGTGCCTGTGGAACTTTTGCCTCCAGAGGTGCGGTCAAAATATC
. : . : . : . : . : . :
rJMSF028G03+ AAGGTAAACCAAGTGATAGGTCCAAGCGTGCCAAGGAGGAAACAAAAACTTCAGTGCAAC
rJMSF010N19+ AAGGTAAACCAAGTGATAGGTCCAAGCGTGCCAAGGAGGAAACAAAAACTTCAGTGCAAC
rJMSF040L08+ AAGGTAAACCAA-TGATAGGTCCAAGCGTGCCAAGGAGGAAACAAAAACTTCAGTGCAAC
rJMSF002C20+ AAGGTAAACCAAGTGATAGGTCCAAGCGTGCCAAGGAGGAAACAAAAACTTCAGTGCAAC
____________________________________________________________
consensus AAGGTAAACCAAGTGATAGGTCCAAGCGTGCCAAGGAGGAAACAAAAACTTCAGTGCAAC
. : . : . : . : . : . :
rJMSF028G03+ AAGCAGAAGAAAATCAGGTCGCAACACCTGCTAGTGAGGTATGCATCGAAGGCGGCAAGG
rJMSF010N19+ AAGCAGAAGAAAATCAGGTCGCAACACCTGCTAGTGAGGTATGCATCGAAGGCGGCAAGG
rJMSF040L08+ AAGCAGAAGAAAATCAGGTCGCAACACCTGCTAGTGAGGTATGCATCGAAGGCGGCAAGG
rJMSF002C20+ AAGCAGAAGAAAATCAGGTCGCAACACCTGCTAGTGAGGTATGCATCGAAGGCGGCAAGG
____________________________________________________________
consensus AAGCAGAAGAAAATCAGGTCGCAACACCTGCTAGTGAGGTATGCATCGAAGGCGGCAAGG
. : . : . : . : . : . :
rJMSF028G03+ CTGACCTTGAAACCTCTGCTACTCCAATGGACACAGATGCTACCGGGAACATTTCTCAAA
rJMSF010N19+ CTGACCTTGAAACCTCTGCTACTCCAATGGACACAGATGCTACCGGGAACATTTCTCAAA
rJMSF040L08+ CTGACCTTGAAACCTCTGCTACTCCAATGGACACAGATGCTACCGGGAACATTTCTCAAA
rJMSF002C20+ CTGACCTTGAAACCTCTGCTACTCCAATGGACACAGATGCTACCGGGAACATTTCTCAAA
____________________________________________________________
consensus CTGACCTTGAAACCTCTGCTACTCCAATGGACACAGATGCTACCGGGAACATTTCTCAAA
. : . : . : . : . : . :
rJMSF028G03+ GTGGAACTCCAACACCAGACGAAAATCAGAAGCAAAGTTCTGACACAGATGTTGGTCAGG
rJMSF010N19+ GTGGAACTCCAACACCAGACGAAAATCAGAAGCAAAGTTCTGACACAGATGTTGGTCAGG
rJMSF040L08+ GTGGAACTCCAACACCAGACGAAAATCAGAAGCAAAGTTCTGACACAGATGTTGGTCAGG
rJMSF002C20+ GTGGAACTCCAACACCAGACGAAAATCAGAAGCAAAGTTCTGACACAGATGTTGGTCAGG
____________________________________________________________
consensus GTGGAACTCCAACACCAGACGAAAATCAGAAGCAAAGTTCTGACACAGATGTTGGTCAGG
. : . : . : . : . : . :
rJMSF028G03+ AAGCAGGGCAGATAGAAGCTGATGCAGAAACACAGCAGATTGAAGCAGATGTAGAAGCAG
rJMSF010N19+ AAGCAGGGCAGATAGAAGCTGATGCAGAAACACAGCAGATTGAAGCAGATGTAGAAGCAG
rJMSF040L08+ AAGCAGGGCAGATAGAAGCTGATGCAGAAACACAGCAGATTGAAGCAGATGTAGAAGCAG
rJMSF002C20+ AAGCAGGGCAGATAGAAGCTGATGCAGAAACACAGCAGATTGAAGCAGATGTAGAAGCAG
____________________________________________________________
consensus AAGCAGGGCAGATAGAAGCTGATGCAGAAACACAGCAGATTGAAGCAGATGTAGAAGCAG
. : . : . : . : . : . :
rJMSF028G03+ AAGCAGAAGCAGAGGCAGAAGCAGAAGCAGGAACCATCGATGGAGAAACTGGTGACGCTG
rJMSF010N19+ AAGCAGAAGCAGAGGCAGAAGCAGAAGCAGGAACCATCGATGGAGAAACTGGTGACGCTG
rJMSF040L08+ AAGCAGAAGCAGAGGCAGAAGCAGAAGCAGGAACCATCGATGGAGAAACTGGTGACGCTG
rJMSF002C20+ AAGCAGAAGCAGAGGCAGAAGCAGAAGCAGGAACCATCGATGGAGAAACTGGTGACGCTG
____________________________________________________________
consensus AAGCAGAAGCAGAGGCAGAAGCAGAAGCAGGAACCATCGATGGAGAAACTGGTGACGCTG
. : . : . : . : . : . :
rJMSF028G03+ ACGCTGATTTAGATGCAGTTGGCTGATTACTACAGGCAGAGGTAGAAGCTGTATCTCGAT
rJMSF010N19+ ACGCTGATTTAGATGCAGTTGGCTGATTACTACAGGCAGAGGTAGAAGCTGTATCTCGAT
rJMSF040L08+ ACGCTGATTTAGATGCAGTTGGCTGATTACTACAGGCAGAGGTAGAAGCTGTATCTCGAT
rJMSF002C20+ ACGCTGATTTAGATGCAGTTGGCTGATTACTACAGGCAGAGGTAGAAGCTGTATCTCGAT
____________________________________________________________
consensus ACGCTGATTTAGATGCAGTTGGCTGATTACTACAGGCAGAGGTAGAAGCTGTATCTCGAT
. : . : . : . : . : . :
rJMSF028G03+ TTGTAATTGATTTTCTTGTGTCATGGAACTTCCGAACTTGCTCTCTTCAAAGAGATTCAG
rJMSF010N19+ TTGTAATTGATTTTCTTGTGTCATGGAACTTCCGAACTTGCTCTCTTCAAAGAGATTCAG
rJMSF040L08+ TTGTAATTGATTTTCTTGTGTCATGGAACTTCCGAACTTGCTCTCTTCAAAGAGATTCAG
rJMSF002C20+ TTGTAATTGATTTTCTTGTGTCATGGAACTTCCGAACTTGCTCTCTTCAAAGAGATTCAG
____________________________________________________________
consensus TTGTAATTGATTTTCTTGTGTCATGGAACTTCCGAACTTGCTCTCTTCAAAGAGATTCAG
. : . : . : . : . : . :
rJMSF028G03+ ATCAAACCACGCCCTCTGGGTAAGAGAAGGCTGATCATGATATTCATGCCCATTACGCGG
rJMSF010N19+ ATCAAACCACGCCCTCTGGGTAAGAGAAGGCTGATC
rJMSF040L08+ ATCAAACCACGCCCTCTGGGTAAGAGAAGGCTGATCATGATATTCATGCCCATTACGCGG
rJMSF002C20+ ATCAAACCACGCCCTCTGGGTAAGAGAAGGCTGATCATGATATTCATGCCCATTACGCGG
____________________________________________________________
consensus ATCAAACCACGCCCTCTGGGTAAGAGAAGGCTGATCATGATATTCATGCCCATTACGCGG
. : . : . : . : . : . :
rJMSF028G03+ CCTAATTAATTCTCAATCTTGTCTGTCGCTTTTGAAGCAGTTTTGTTACTCTTCTCATGC
rJMSF040L08+ CCTAATTAATTCTCAATCTTGTCTGTCGCTTTTGAAGCAGTTTTGTTACTCTTCTCATGC
rJMSF002C20+ CCTAATTAATTCTCAATCTTGTCTGTCGCTTTTGAAGCAGTTTTGTTACTCTTCTCATGC
____________________________________________________________
consensus CCTAATTAATTCTCAATCTTGTCTGTCGCTTTTGAAGCAGTTTTGTTACTCTTCTCATGC
. : . : . : . : . : . :
rJMSF028G03+ TCCATATGTGATTATTGCATTCAAAC
rJMSF040L08+ TCCATATGTGATTATTGCATTCAAACGCTGAAC
rJMSF002C20+ TCCATATGTGATTATTGCATTCAAACGCTGAACAGACCTATGAATGAGATTGAAGTGTTG
____________________________________________________________
consensus TCCATATGTGATTATTGCATTCAAACGCTGAACAGACCTATGAATGAGATTGAAGTGTTG
. : . : . : . : . : . :
rJMSF002C20+ TACTTTTATGATAGAACTTCGTTCTGACATATGAGGAGAATGTAGATGTAGATTAAGATA
____________________________________________________________
consensus TACTTTTATGATAGAACTTCGTTCTGACATATGAGGAGAATGTAGATGTAGATTAAGATA