Contig 011232:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002B22Sequence325006345 (3)738011232 (3)ref|XP_006366239.1|296PREDICTED: uncharacterized protein LOC102599907 [Solanum tuberosum]
JMSF036O06Sequence641006345 (3)ref|XP_009616003.1|209PREDICTED: uncharacterized protein LOC104108627 [Nicotiana tomentosiformis]676011232 (3)ref|XP_006366239.1|255PREDICTED: uncharacterized protein LOC102599907 [Solanum tuberosum]
JMSF045B13Sequence465006370 (16)ref|XP_010095802.1|6e-19hypothetical protein L484_022158 [Morus notabilis] gb|EXB62270.1| hypothetical p589011232 (3)ref|XP_006366239.1|163PREDICTED: uncharacterized protein LOC102599907 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF002B22+                                                   TTTATGGCATGTCGCCTTG
                      ____________________________________________________________
consensus                                                      TTTATGGCATGTCGCCTTG
 
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rJMSF036O06+                                                     CTATTTTACCGAGCTGC
rJMSF002B22+          GCAGTTCGTTCTGATTGTTGCTGCAAGTTCTGTCGGGGAGGAGCTATTTTACCGAGCTGC
                      ____________________________________________________________
consensus             GCAGTTCGTTCTGATTGTTGCTGCAAGTTCTGTCGGGGAGGAGCTATTTTACCGAGCTGC
 
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rJMSF036O06+          TGTCCAGGGAGCTTTGGCAGACATATTCCTTAGGAGCACGGATTTGGTCACGGATGCTCG
rJMSF002B22+          TGTCCAGGGAGCTTTGGCAGACATATTCCTTAGGAGCACGGATTTGGTCACGGATGCTCG
                      ____________________________________________________________
consensus             TGTCCAGGGAGCTTTGGCAGACATATTCCTTAGGAGCACGGATTTGGTCACGGATGCTCG
 
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rJMSF036O06+          TGGGATGGCATCTATGACCGGGGTTTTGCCACCGTTCGTCCCGTTTGCTCAGGCGTTTGC
rJMSF002B22+          TGGGATGGCATCTATGACCGGGGTTTTGCCACCGTTCGTCCCGTTTGCTCAGGCGTTTGC
                      ____________________________________________________________
consensus             TGGGATGGCATCTATGACCGGGGTTTTGCCACCGTTCGTCCCGTTTGCTCAGGCGTTTGC
 
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rJMSF036O06+          TGCTGTTGTCACTGCTGCTCTTACGGGTTCCCTTTACTATATGGCTTCCTCTCCAAAAGA
rJMSF045B13+                                                                   AGA
rJMSF002B22+          TGCTGTTGTCACTGCTGCTCTTACGGGTTCCCTTTACTATATGGCTTCCTCTCCAAAAGA
                      ____________________________________________________________
consensus             TGCTGTTGTCACTGCTGCTCTTACGGGTTCCCTTTACTATATGGCTTCCTCTCCAAAAGA
 
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rJMSF036O06+          TCCCGCTTATATTGTTGCACCAGTATTGAAGACTCGTTCAGGTCGTGAAGATCTGAAAAA
rJMSF045B13+          TCCCGCTTATANTGTTGCACCAGTATTGAAGACTCGTTCAGGTCGTGAAGATCTGAAAAA
rJMSF002B22+          TCCCGCTTATATTGTTGCACCAGTATTGAAGACTCGTTCAGGTCGTGAAGATCTGAAAAA
                      ____________________________________________________________
consensus             TCCCGCTTATATTGTTGCACCAGTATTGAAGACTCGTTCAGGTCGTGAAGATCTGAAAAA
 
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rJMSF036O06+          GCTATTTGCAGCCTGGTACGAGAGGCGGCAAATGAAGAAGATATACTCTCCCCTACTCGA
rJMSF045B13+          GCTATTTGCAGCCTGGTACGAGAGGCGGCAAATGAAGAAGATATACTCTCCCCTACTCGA
rJMSF002B22+          GCTATTTGCAGCCTGGTACGAGAGGCGGCAAATGAAGAAGATATACTCTCCCCTACTCGA
                      ____________________________________________________________
consensus             GCTATTTGCAGCCTGGTACGAGAGGCGGCAAATGAAGAAGATATACTCTCCCCTACTCGA
 
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rJMSF036O06+          AGCAATTCTAGCCCTCTACCTCGGTTTCGAGTGGATCCAGACGGATAACATTCTTGCACC
rJMSF045B13+          AGCAATTNTAGCCCTNTACCTCGGTTTCGAGTGGATCCAGNCGGATAACATTCTTGCACC
rJMSF002B22+          AGCAATTCTAGCCCTCTACCTCGGTTTCGAGTGGATCCAGACGGATAACATTCTTGCACC
                      ____________________________________________________________
consensus             AGCAATTCTAGCCCTCTACCTCGGTTTCGAGTGGATCCAGACGGATAACATTCTTGCACC
 
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rJMSF036O06+          CATCATCACACACGGTATATACTCGACTGTCGTTTTGGGGCACGGGCTGTGGAAGATCAA
rJMSF045B13+          CATCATCACACACGGTATATACTCGACTGTCGTTTTGGGGCACGGGCTGTGGAAGATCAA
rJMSF002B22+          CATCATCACACACGGTATATACTCGACTGTCGTTTTGGGGCACGGGCTGTGGAAGATCAA
                      ____________________________________________________________
consensus             CATCATCACACACGGTATATACTCGACTGTCGTTTTGGGGCACGGGCTGTGGAAGATCAA
 
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rJMSF036O06+          CGATCACCGGAGAAGACTACGCCAGAGGATTCAACAGCTCAAACAGGAAGGAAAACAGTC
rJMSF045B13+          CGATCACCGGAGAAGACTACGCCAGAGGATTCAACAGCTCAAACAGGAAGGAAAACAGTC
rJMSF002B22+          CGATCACCGGAGAAGACTACGCCAGAGGATTCAACAGCTCAAACAGGAAGGAAAACAGTC
                      ____________________________________________________________
consensus             CGATCACCGGAGAAGACTACGCCAGAGGATTCAACAGCTCAAACAGGAAGGAAAACAGTC
 
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rJMSF036O06+          AAGGGATCAGTGATTTGGTTTGGGAAAATTTTGTAAATTAATAGAGCTTCTTGTTGCTAT
rJMSF045B13+          AAGGGATCAGTGATTTGGTTTGGGAAAATTTTGTAAATTAATAGAGCTTCTTGTTGCTAT
rJMSF002B22+          AAGGGATCAGTGATTTGGTTTGGGAAAATTTTGTAAATTAATAGAGCTTCTTGTTGCTAT
                      ____________________________________________________________
consensus             AAGGGATCAGTGATTTGGTTTGGGAAAATTTTGTAAATTAATAGAGCTTCTTGTTGCTAT
 
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rJMSF036O06+          TATTAGTAGTAGTATATATATATATTAA-GTATATATCATGGAAAAAGTAATTTTGTA  
rJMSF045B13+          TATTAGTAGTAGTATATATATATATTAATGTATATATCATGGAAAAAGTAATTTTGTA  
rJMSF002B22+          TATTAGTAGTAGTATATATATATATTAA-GTATATATCATGGAAAAAGTAATTTTGTACA
                      ____________________________________________________________
consensus             TATTAGTAGTAGTATATATATATATTAA-GTATATATCATGGAAAAAGTAATTTTGTACA
 
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rJMSF002B22+          CTGTATATGAACATACTAGCTTAACTGATACAATCCCATTTAACTGTAAATGGAACTTTG
                      ____________________________________________________________
consensus             CTGTATATGAACATACTAGCTTAACTGATACAATCCCATTTAACTGTAAATGGAACTTTG