Contig 011231:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P24Sequence328001913 (3)ref|XP_011076767.1|8e-36PREDICTED: protein DA1-related 2 isoform X2 [Sesamum indicum]688011231 (3)ref|XP_009615651.1|2e-77PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis]
JMSF006G17Sequence409011231 (3)ref|XP_009587496.1|7e-49PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis]
JMSF030E01Sequence626011231 (3)ref|XP_009615651.1|1e-98PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis]743012437 (14)ref|XP_009614370.1|2e-68PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF030E01+                                               GAGAAACATGGGTTCCACCACATG
                      ____________________________________________________________
consensus                                                 GAGAAACATGGGTTCCACCACATG
 
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JMSF030E01+           CCTGAAACCAGAGGCCTATGCCTGTCTGAGGAGCAGACAGTTAGCAGTATACAGAGAAGA
rJMSF001P24+                                          GCAGACAGTTAGCAGTATACAGAGAAGA
                      ____________________________________________________________
consensus             CCTGAAACCAGAGGCCTATGCCTGTCTGAGGAGCAGACAGTTAGCAGTATACAGAGAAGA
 
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JMSF030E01+           CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
rJMSF001P24+          CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
                      ____________________________________________________________
consensus             CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
 
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JMSF030E01+           AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
rJMSF001P24+          AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
                      ____________________________________________________________
consensus             AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
 
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JMSF030E01+           ATTCTTGCACACGAATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
JMSF006G17+                        AATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
rJMSF001P24+          ATTNTTGCACNCGAATTAATGCATGCCTGGTTACGTNTGAAAGGATATCGCAATCTCAAC
                      ____________________________________________________________
consensus             ATTCTTGCACACGAATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
 
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JMSF030E01+           CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
JMSF006G17+           CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
rJMSF001P24+          CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
                      ____________________________________________________________
consensus             CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
 
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JMSF030E01+           ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
JMSF006G17+           ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
rJMSF001P24+          ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
                      ____________________________________________________________
consensus             ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
 
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JMSF030E01+           TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
JMSF006G17+           TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
rJMSF001P24+          TCTTCTTCCAAGAAAGGTGGAAGGTNTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
                      ____________________________________________________________
consensus             TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
 
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JMSF030E01+           CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
JMSF006G17+           CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
rJMSF001P24+          CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
                      ____________________________________________________________
consensus             CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
 
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JMSF030E01+           GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
JMSF006G17+           GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
rJMSF001P24+          GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTNGTNTTACCGGCACTTTT
                      ____________________________________________________________
consensus             GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
 
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JMSF030E01+           CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATC  
JMSF006G17+           CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATC  
rJMSF001P24+          CCCATATAAATNTGCCTTTTTCCCCATCATNTGCTNTTCTTTGGGCATGTCAGAGATCAT
                      ____________________________________________________________
consensus             CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATCAT
 
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rJMSF001P24+          GGAATACCCTTCATTATTTTTTGTCTGGGGATTCAAGAAAACNGATGCAGAAGTATGCAG
                      ____________________________________________________________
consensus             GGAATACCCTTCATTATTTTTTGTCTGGGGATTCAAGAAAACNGATGCAGAAGTATGCAG
 
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rJMSF001P24+          AAACTGCAGAATCCTTTAAAAAAAAAGAACTTTTTTTTTTCGACGTAGATGATGATGTTG
                      ____________________________________________________________
consensus             AAACTGCAGAATCCTTTAAAAAAAAAGAACTTTTTTTTTTCGACGTAGATGATGATGTTG