Contig 011230:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031B05Sequence551000542 (9)ref|XP_009788736.1|9e-82PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris]732011230 (4)sp|Q03682.1|BIP2_TOBAC6e-78RecName: Full=Luminal-binding protein 2; Short=BiP 2; AltName: Full=78 kDa gluc
JMSF001G17Sequence367000542 (9)ref|XP_009788736.1|4e-39PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris]229011230 (4)gb|KHG03675.1|2e-08Luminal-binding 5 [Gossypium arboreum] gb|KHG17377.1| Luminal-binding 5 [Gossypi
JMSF045G24Sequence781000542 (9)ref|XP_009788736.1|2e-137PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris]695011230 (4)sp|Q03683.1|BIP3_TOBAC3e-66RecName: Full=Luminal-binding protein 3; Short=BiP 3; AltName: Full=78 kDa gluc
JMSF049O02Sequence684000542 (9)ref|XP_009788736.1|2e-126PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris]757011230 (4)sp|Q03686.1|BIP8_TOBAC1e-92RecName: Full=Luminal-binding protein 8; Short=BiP 8; AltName: Full=78 kDa gluc

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049O02+ CTACCAAGATCAACAGACAACTGTCACAATTCAGGTCTTTGAAGGTGAAAGG
                      ____________________________________________________________
consensus CTACCAAGATCAACAGACAACTGTCACAATTCAGGTCTTTGAAGGTGAAAGG
 
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rJMSF049O02+ GGTCTCACAAAGGACAACAGGTTGCTTGGAAAATTTGATCTAACCGGAATAG-CCCCAGC
rJMSF045G24+ TTGCTTGGAAAATTTGATCTAACCGGAATAGCCCCCAGC
rJMFF031B05+ CAAAGGACAACAGGTTGCTTGGAAAATTTGATCTACCCGGAATAG-CCCCAGC
                      ____________________________________________________________
consensus GGTCTCACAAAGGACAACAGGTTGCTTGGAAAATTTGATCTAACCGGAATAG-CCCCAGC
 
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rJMSF049O02+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
rJMSF045G24+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
rJMFF031B05+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
                      ____________________________________________________________
consensus TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
 
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rJMSF049O02+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
rJMSF045G24+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
rJMFF031B05+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
                      ____________________________________________________________
consensus TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
 
. : . : . : . : . : . :
rJMSF049O02+ AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
rJMSF045G24+ AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
rJMFF031B05+ AGGGCGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
                      ____________________________________________________________
consensus AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
 
. : . : . : . : . : . :
rJMSF049O02+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
rJMSF045G24+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
rJMFF031B05+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
                      ____________________________________________________________
consensus GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
 
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rJMSF049O02+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
rJMSF045G24+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
rJMFF031B05+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
                      ____________________________________________________________
consensus CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
 
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rJMSF049O02+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
rJMSF045G24+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
rJMFF031B05+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
                      ____________________________________________________________
consensus GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
 
. : . : . : . : . : . :
rJMSF049O02+ CGCTGAGAAGTAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMSF045G24+ CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMFF031B05+ CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMSF001G17+ AGGATTATGANGAAAAGCTCAANGAAGTAGAGGCTGTATGCAACCCAAT
                      ____________________________________________________________
consensus CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
 
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rJMSF049O02+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMSF045G24+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMFF031B05+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMSF001G17+ TATCNCCGCTGTATACCAGAGATCNGNCGGAGCCCCNNGANGTAGTGGAAGCAGTNACGA
                      ____________________________________________________________
consensus TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
 
. : . : . : . : . : . :
rJMSF049O02+ CGACGA
rJMSF045G24+ CGACGA
rJMFF031B05+ CGACGA
rJMSF001G17+ CGNCGACTCTCATGNTGANCNGTAGATGATTTTCTTTCTTNTTCCTNNTCTTTATTTAAT
                      ____________________________________________________________
consensus CGACGACTCTCATGNTGANCNGTAGATGATTTTCTTTCTTNTTCCTNNTCTTTATTTAAT
 
. : . : . : . : . : . :
rJMSF001G17+ CACTNGTATGAGAAATTGATGCCTANGAATCCTNGGATAGGCAGGCTAATGTTGGATAAT
                      ____________________________________________________________
consensus CACTNGTATGAGAAATTGATGCCTANGAATCCTNGGATAGGCAGGCTAATGTTGGATAAT