| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031B05 | Sequence | 551 | 000542 (9) | ref|XP_009788736.1| | 9e-82 | PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris] | 732 | 011230 (4) | sp|Q03682.1|BIP2_TOBAC | 6e-78 | RecName: Full=Luminal-binding protein 2; Short=BiP 2; AltName: Full=78 kDa gluc |
| JMSF001G17 | Sequence | 367 | 000542 (9) | ref|XP_009788736.1| | 4e-39 | PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris] | 229 | 011230 (4) | gb|KHG03675.1| | 2e-08 | Luminal-binding 5 [Gossypium arboreum] gb|KHG17377.1| Luminal-binding 5 [Gossypi |
| JMSF045G24 | Sequence | 781 | 000542 (9) | ref|XP_009788736.1| | 2e-137 | PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris] | 695 | 011230 (4) | sp|Q03683.1|BIP3_TOBAC | 3e-66 | RecName: Full=Luminal-binding protein 3; Short=BiP 3; AltName: Full=78 kDa gluc |
| JMSF049O02 | Sequence | 684 | 000542 (9) | ref|XP_009788736.1| | 2e-126 | PREDICTED: luminal-binding protein 4 [Nicotiana sylvestris] | 757 | 011230 (4) | sp|Q03686.1|BIP8_TOBAC | 1e-92 | RecName: Full=Luminal-binding protein 8; Short=BiP 8; AltName: Full=78 kDa gluc |
This contig is upended
. : . : . : . : . : . :
rJMSF049O02+ CTACCAAGATCAACAGACAACTGTCACAATTCAGGTCTTTGAAGGTGAAAGG
____________________________________________________________
consensus CTACCAAGATCAACAGACAACTGTCACAATTCAGGTCTTTGAAGGTGAAAGG
. : . : . : . : . : . :
rJMSF049O02+ GGTCTCACAAAGGACAACAGGTTGCTTGGAAAATTTGATCTAACCGGAATAG-CCCCAGC
rJMSF045G24+ TTGCTTGGAAAATTTGATCTAACCGGAATAGCCCCCAGC
rJMFF031B05+ CAAAGGACAACAGGTTGCTTGGAAAATTTGATCTACCCGGAATAG-CCCCAGC
____________________________________________________________
consensus GGTCTCACAAAGGACAACAGGTTGCTTGGAAAATTTGATCTAACCGGAATAG-CCCCAGC
. : . : . : . : . : . :
rJMSF049O02+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
rJMSF045G24+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
rJMFF031B05+ TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
____________________________________________________________
consensus TCCTAGAGGAACACCTCAAATTGAAGTTACATTTGAGGTTGATGCCAACGGCATTTTGAA
. : . : . : . : . : . :
rJMSF049O02+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
rJMSF045G24+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
rJMFF031B05+ TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
____________________________________________________________
consensus TGTTAAAGCCGAAGACAAGGCCTCTGGGCGATCTGAGAAGATTACCATCACCAACGATAA
. : . : . : . : . : . :
rJMSF049O02+ AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
rJMSF045G24+ AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
rJMFF031B05+ AGGGCGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
____________________________________________________________
consensus AGGACGCCTGAGCCAAGAGGAAATTGAGCGGATGGTGAGGGAGGCTGAAGAGTTTGCCGA
. : . : . : . : . : . :
rJMSF049O02+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
rJMSF045G24+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
rJMFF031B05+ GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
____________________________________________________________
consensus GGAGGACAAGAAGGTAAAAGAAAGGATTGATGCCCGTAACAGCTTGGAGACGTATGTTTA
. : . : . : . : . : . :
rJMSF049O02+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
rJMSF045G24+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
rJMFF031B05+ CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
____________________________________________________________
consensus CAACATGAAGAACCAGATCAACGACAAGGACAAGCTAGCAGATAAACTAGAATCCGAGGA
. : . : . : . : . : . :
rJMSF049O02+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
rJMSF045G24+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
rJMFF031B05+ GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
____________________________________________________________
consensus GAAGGAGAAGATTGAGACAGCAACAAAAGAGGCCCTTGAATGGTTGGATGACAATCAGAA
. : . : . : . : . : . :
rJMSF049O02+ CGCTGAGAAGTAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMSF045G24+ CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMFF031B05+ CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
rJMSF001G17+ AGGATTATGANGAAAAGCTCAANGAAGTAGAGGCTGTATGCAACCCAAT
____________________________________________________________
consensus CGCTGAGAAGGAGGATTATGATGAAAAGCTCAAGGAAGTAGAGGCTGTATGCAACCCAAT
. : . : . : . : . : . :
rJMSF049O02+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMSF045G24+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMFF031B05+ TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
rJMSF001G17+ TATCNCCGCTGTATACCAGAGATCNGNCGGAGCCCCNNGANGTAGTGGAAGCAGTNACGA
____________________________________________________________
consensus TATCACCGCTGTATACCAGAGATCTGGCGGAGCCCCTGGAGGTAGTGGAAGCAGTGACGA
. : . : . : . : . : . :
rJMSF049O02+ CGACGA
rJMSF045G24+ CGACGA
rJMFF031B05+ CGACGA
rJMSF001G17+ CGNCGACTCTCATGNTGANCNGTAGATGATTTTCTTTCTTNTTCCTNNTCTTTATTTAAT
____________________________________________________________
consensus CGACGACTCTCATGNTGANCNGTAGATGATTTTCTTTCTTNTTCCTNNTCTTTATTTAAT
. : . : . : . : . : . :
rJMSF001G17+ CACTNGTATGAGAAATTGATGCCTANGAATCCTNGGATAGGCAGGCTAATGTTGGATAAT
____________________________________________________________
consensus CACTNGTATGAGAAATTGATGCCTANGAATCCTNGGATAGGCAGGCTAATGTTGGATAAT