Contig 011229:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF050H03+                                                                   CAT
                      ____________________________________________________________
consensus                                                                      CAT
 
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rJMSF050H03+          CAGTTTGGGNTACTAGGNACAGTTATTGAGGCAGACTGCAAATTCCTTATATTTGCACAT
                      ____________________________________________________________
consensus             CAGTTTGGGNTACTAGGNACAGTTATTGAGGCAGACTGCAAATTCCTTATATTTGCACAT
 
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rJMSF050H03+          CACGTAGAAATGATTGATGCAATTCACCAGTATTTGCTTAAAAAGAAAGTTGGTTGCATT
                      ____________________________________________________________
consensus             CACGTAGAAATGATTGATGCAATTCACCAGTATTTGCTTAAAAAGAAAGTTGGTTGCATT
 
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rJMSF050H03+          CGCATTGATGGTGGTACTCCAGCAGCATCACGCCAAGCTTTGGTCACAGATTTTCAGGAA
                      ____________________________________________________________
consensus             CGCATTGATGGTGGTACTCCAGCAGCATCACGCCAAGCTTTGGTCACAGATTTTCAGGAA
 
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rJMSF050H03+          AAAGCATCAATAAAGGCTGCAGTGTCATATTTGCAGAGCTATGTTGGACTCCAGGTGACC
rJMSF001F04+                                 GTCATATTTGCAGAGCTATGTTGGACTCCAGGTGACC
                      ____________________________________________________________
consensus             AAAGCATCAATAAAGGCTGCAGTGTCATATTTGCAGAGCTATGTTGGACTCCAGGTGACC
 
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rJMSF050H03+          TTATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTGTCATCGGTCAATATATACT
rJMSF001F04+          TTATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTGTCATCGGTCAATATATACT
                      ____________________________________________________________
consensus             TTATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTGTCATCGGTCAATATATACT
 
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rJMSF050H03+          ATCTGCTGGCAAATGACACTGTTGACGACATAATTTGGGATGTTGTAAAGAACAAGCTGG
rJMSF001F04+          ATCTGCTGGCAAATGACACTGTTGACGACATAATTTGGGATGTTGTAAAGAACAAGCTGG
                      ____________________________________________________________
consensus             ATCTGCTGGCAAATGACACTGTTGACGACATAATTTGGGATGTTGTAAAGAACAAGCTGG
 
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rJMSF050H03+          AAAATTTGGGACAGATGCTTGACGGCCAAGAGAAGTCCTTAGAAGTATTAGAAGATAACT
rJMSF001F04+          AAAATTTGGGACAGATGCTTGACGGCCAAGAGAAGTCCTTAGAAGTATTAGAAGATAACT
                      ____________________________________________________________
consensus             AAAATTTGGGACAGATGCTTGACGGCCAAGAGAAGTCCTTAGAAGTATTAGAAGATAACT
 
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rJMSF050H03+          CAAATAAAAGCCCTATGAAACAAAAAACTCTTGATTCCTTCATGAAACGTTGCAACACAT
rJMSF001F04+          CAAATAAAAGCCCTATGAAACAAAAAACTCTTGATTCCTTCATGAAACGTTGCAACACAT
                      ____________________________________________________________
consensus             CAAATAAAAGCCCTATGAAACAAAAAACTCTTGATTCCTTCATGAAACGTTGCAACACAT
 
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rJMSF050H03+          CATCTGAGCACGAACCCATGCCAAAACACTTGCGCCATTGAACATCAGGCATTTCAACTG
rJMSF001F04+          CATCTGAGCACGAACCCATGCCAAAACACTTGCGCCATTGAACATCAGGCATTTCAACTA
                      ____________________________________________________________
consensus             CATCTGAGCACGAACCCATGCCAAAACACTTGCGCCATTGAACATCAGGCATTTCAACTG
 
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rJMSF050H03+          CCAATGTTTTGTACAGACCGAG                                      
rJMSF001F04+          CCAATGTTTTGTACAGACCGAGGTATGACTATTATTTGAAATGGTATGGTGGTTGTATAG
                      ____________________________________________________________
consensus             CCAATGTTTTGTACAGACCGAGGTATGACTATTATTTGAAATGGTATGGTGGTTGTATAG
 
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rJMSF001F04+          CTTATTGTCCTTATTTTCTTTTGGATATATTTATTTGTAGTTTAACTGCACAGTTAAACC
                      ____________________________________________________________
consensus             CTTATTGTCCTTATTTTCTTTTGGATATATTTATTTGTAGTTTAACTGCACAGTTAAACC
 
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rJMSF001F04+          ACAGCCAGATGAAAATGAATGGCAAAAGAGTATGTCTATCTTCATTCTTGAGACCCCTGT
                      ____________________________________________________________
consensus             ACAGCCAGATGAAAATGAATGGCAAAAGAGTATGTCTATCTTCATTCTTGAGACCCCTGT
 
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rJMSF001F04+          ATCTCTGCAGCTTCTATCAGATTCAGGTAGACCATTGTATATGCTCCGAGAGTGAGCTCT
                      ____________________________________________________________
consensus             ATCTCTGCAGCTTCTATCAGATTCAGGTAGACCATTGTATATGCTCCGAGAGTGAGCTCT
 
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rJMSF001F04+          GCTTCTGAGTACCAGTTATTGAATCAAAATAGAGATTAGGGTAAAATATCTCCAATCTTT
                      ____________________________________________________________
consensus             GCTTCTGAGTACCAGTTATTGAATCAAAATAGAGATTAGGGTAAAATATCTCCAATCTTT