Contig 011223:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051C09Sequence620009254 (6)ref|NP_001234542.1|3e-105carotenoid cleavage dioxygenase 1-1 [Solanum lycopersicum] gb|AAT68187.1| carote615011223 (4)ref|XP_010695196.1|7e-17PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Beta vulgaris subsp.
JMSF013H07Sequence186009254 (6)801011223 (4)gb|AHE41421.1|2e-105carotenoid cleavage dioxygenase 1, partial [Lycium chinense]
JMSF036O09Sequence565009254 (6)emb|CAD33264.1|1e-51carotenoid cleavage oxygenase [Solanum lycopersicum]773011223 (4)ref|XP_009784266.1|9e-110PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nico
JMSF052O22Sequence592009254 (6)emb|CAD33264.1|7e-75carotenoid cleavage oxygenase [Solanum lycopersicum]895011223 (4)ref|XP_009784266.1|4e-136PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like isoform X2 [Nico

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052O22+                     GGCTCGCTTTGGAGTCCTTCCACGCTATGCAAAGAATGAACTGGCTATC
                      ____________________________________________________________
consensus                        GGCTCGCTTTGGAGTCCTTCCACGCTATGCAAAGAATGAACTGGCTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052O22+          CAATGGTTTGAGCTTCCTAACTGCTTCATATTTCACAATGCCAATGCATGGGAGGAGGGA
                      ____________________________________________________________
consensus             CAATGGTTTGAGCTTCCTAACTGCTTCATATTTCACAATGCCAATGCATGGGAGGAGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+                     TTTGATCACATGCCGCCNTGAGAATCTAGATCTAGACATGGTTAATGGA
rJMSF036O09+                     TTTGATCACATGCCGCCTTGAGAATCTAGATCTAGACATGGTTAATGGA
rJMSF052O22+          GATGAAATTGTTTTGATCACATGCCGCCTTGAGAATCTAGATCTAGACATGGTTAATGGA
                      ____________________________________________________________
consensus             GATGAAATTGTTTTGATCACATGCCGCCTTGAGAATCTAGATCTAGACATGGTTAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          ACTGCCGAAGAAGCTCTTGAGAATTTTGCAAACGAGCTGTATGAAATGAGATTTAACATG
rJMSF036O09+          ACTGCCGAAGAAGCTCTTGAGAATTTTGCAAACGAGCTGTATGAAATGAGATTTAACATG
rJMSF052O22+          ACTGCCGAAGAAGCTCTTGAGAATTTTGCAAACGAGCTGTATGAAATGAGATTTAACATG
                      ____________________________________________________________
consensus             ACTGCCGAAGAAGCTCTTGAGAATTTTGCAAACGAGCTGTATGAAATGAGATTTAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          AAAAGCTATCTAGCAACACAGAAGAAATTATCCGAGTCTGCTGTCGATTTTCCACGGGTG
rJMSF036O09+          AAAAGCTATCTAGCAACACAGAAGAAATTATCCGAGTCTGCTGTCGATTTTCCACGGGTG
rJMSF052O22+          AAAAGCTATCTAGCAACACAGAAGAAATTATCCGAGTCTGCTGTCGATTTTCCACGGGTG
                      ____________________________________________________________
consensus             AAAAGCTATCTAGCAACACAGAAGAAATTATCCGAGTCTGCTGTCGATTTTCCACGGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          AATGAGAATTACACTGGCAGGAAACAAAGGTATGTATATGGGACCATATTAAACAGCATT
rJMSF036O09+          AATGAGAATTACACTGGCAGGAAACAAAGGTATGTATATGGGACCATATTAAACAGCATT
rJMSF052O22+          AATGAGAATTACACTGGCAGGAAACAAAGGTATGTATATGGGACCATATTAAACAGCATT
                      ____________________________________________________________
consensus             AATGAGAATTACACTGGCAGGAAACAAAGGTATGTATATGGGACCATATTAAACAGCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          GCAAAGGTCAAGGGGATCATCAAATTTGACTTGCATGCTGAACCAGAGACTGGAAAAACA
rJMSF036O09+          GCAAAGGTCAAGGGGATCATCAAATTTGACTTGCATGCTGAACCAGAGACTGGAAAAACA
rJMSF052O22+          GCAAAGGTCAAGGGGATCATCAAATTTGACTTGCATGCTGAACCAGAGACTGGAAAAACA
                      ____________________________________________________________
consensus             GCAAAGGTCAAGGGGATCATCAAATTTGACTTGCATGCTGAACCAGAGACTGGAAAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          CAGCTTGAAGTTGGAGGAAATGTTCAGGGCATCTTTGACCTAGGACCTGGCAGATTTGGT
rJMSF036O09+          CAGCTTGAAGTTGGAGGAAATGTTCAGGGCATCTTTGACCTAGGACCTGGCAGATTTGGT
rJMSF052O22+          CAGCTTGAAGTTGGAGGAAATGTTCAGGGCATCTTTGACCTAGGACCTGGCAGATTTGGT
                      ____________________________________________________________
consensus             CAGCTTGAAGTTGGAGGAAATGTTCAGGGCATCTTTGACCTAGGACCTGGCAGATTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          TCTGAAGCTATCTTTGTTCCCCGTCAGCAAGGTACCGCTTGTGAAGAGGATGATGGCTAC
rJMSF036O09+          TCTGAAGCTATCTTTGTTCCCCGTCAGCAAGGTACCGCTTGTGAAGAGGATGATGGCTAC
rJMSF052O22+          TCTGAAGCTATCTTTGTTCCCCGTCAGCAAGGTACCGCTTGTGAAGAGGATGATGGCTAC
                      ____________________________________________________________
consensus             TCTGAAGCTATCTTTGTTCCCCGTCAGCAAGGTACCGCTTGTGAAGAGGATGATGGCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          TTGATATTCTTTGTACACGATGAGAACACCGGAAAATCAGGAGTGAATGTAATTGATGCA
rJMSF036O09+          TTGATATTCTTTGTACACGATGAGAACACCGGAAAATCAGGAGTGAATGTAATTGATGCA
rJMSF052O22+          TTGATATTCTTTGTACACGATGAGAACACCGGAAAATCAGGAGTGAATGTAATTGATGCA
rJMFF051C09+                                         GAAAATCAGGAGTGAATGTAATTGATGCA
                      ____________________________________________________________
consensus             TTGATATTCTTTGTACACGATGAGAACACCGGAAAATCAGGAGTGAATGTAATTGATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          AAAACAATGTCAGCTGATCCCGTTGCAGTGGTTGATTTACCTAAAAGAGTTCCATATGGA
rJMSF036O09+          AAAACAATGTCAGCTGATCCCGTTGCAGTGGTTGATTTACCTAAAAGAGTTCCATATGGA
rJMSF052O22+          AAAACAATGTCAGCTGATCCCGTTGCAGTGGTTGATTTACCTAAAAGAGTTCCATATGGA
rJMFF051C09+          AAAACAATGTCAGCTGATCCCGTTGCAGTGGTTGATTTACCTAAAAGAGTTCCATATGGA
                      ____________________________________________________________
consensus             AAAACAATGTCAGCTGATCCCGTTGCAGTGGTTGATTTACCTAAAAGAGTTCCATATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          TTCCATGCCTTCTTTGTGACTGAGGAACAACTTCAAACTCAAGCAGAAATTTGAGATCAA
rJMSF036O09+          TTCCATGCCTTCTTTGTGACTGAGGAACAACTTCAAACTCAAGCAGAAATTTGAGATCAA
rJMSF052O22+          TTCCATGCCTTCTTTGTGACTGAGGAACAACTTCAAACTCAAGCAGAAATTTGAGATCAA
rJMFF051C09+          TTCCATGCCTTCTTTGTGACTGAGGAACAACTTCAAACTCAAGCAGAAATTTGAGATCAA
                      ____________________________________________________________
consensus             TTCCATGCCTTCTTTGTGACTGAGGAACAACTTCAAACTCAAGCAGAAATTTGAGATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          ATGTTGGTGACTCAATCTAGTTAAAGCAAGCATAGAAGTGGTTGGGCAAGGTTTTCTTGT
rJMSF036O09+          ATGTTGGTGACTCAATCTAGTTAAAGCAAGCATAGAAGTGGTTGGGCAAGGTTTTCTTGT
rJMSF052O22+          ATGTTGGTGACTCAATCTAGTTAAAGCAAGCATAGAAGTGGTTGGGCAAGGTTTTCTTGT
rJMFF051C09+          ATGTTGGTGACTCAATCTAGTTAAAGCAAGCATAGAAGTGGTTGGGCAAGGTTTTCTTGT
                      ____________________________________________________________
consensus             ATGTTGGTGACTCAATCTAGTTAAAGCAAGCATAGAAGTGGTTGGGCAAGGTTTTCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          TAACTATAAATCTGTCAGCTACTCAGCTCAGCTGCAGTGACTGCTATATTGGTATCTATT
rJMSF036O09+          TAACTATAAATCTGTCAGCTACTCAGCTCAGCTGCAGTGACTGCTATATTGGTATCTATT
rJMSF052O22+          TAACTATAAATCTGTCAGCTACTCAGCTCAGCTGCAGTGACTGCTATATTGGTATCTATT
rJMFF051C09+          TAACTATAAATCTGTCAGCTACTCAGCTCAGCTGCAGTGACTGCTATATTGGTATCTATT
                      ____________________________________________________________
consensus             TAACTATAAATCTGTCAGCTACTCAGCTCAGCTGCAGTGACTGCTATATTGGTATCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013H07+          TCTGTATATGAAATGCTCATTGTAAAGAACATATTCAACTTCCAACGCTTGTT       
rJMSF036O09+          TCTGTATATGAAATGCTCAT                                        
rJMSF052O22+          TCTGTATATGAAATGCTCATTGTAAAGAACATATTCAACTTCCAACGCTTGTT       
rJMFF051C09+          TCTGTATATGAAATGCTCATTGTAAAGAACATATTCAACTTCCAACGCTTGTTTGACTAA
                      ____________________________________________________________
consensus             TCTGTATATGAAATGCTCATTGTAAAGAACATATTCAACTTCCAACGCTTGTTTGACTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051C09+          ATAATAGTGGTTATGAATAACAATATCAGCAACAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             ATAATAGTGGTTATGAATAACAATATCAGCAACAAAAAAAAAAAAAAAACTCTCCAGGGT