Contig 011222:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049J19Sequence600006098 (2)gb|KJB14207.1|9e-15hypothetical protein B456_002G114500 [Gossypium raimondii]622011222 (2)emb|CBI40738.3|9e-46unnamed protein product [Vitis vinifera]
JMFF050O15Sequence599006098 (2)ref|XP_011074081.1|9e-19PREDICTED: F-box/kelch-repeat protein At5g42350-like [Sesamum indicum] ref|XP_0571011222 (2)ref|XP_002273276.1|9e-33PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera] ref|XP_010

Alignment

This contig is upended


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rJMFF049J19+                             ACAAAGCGGTAAGGAAGTTATGGGAGCTTGATCTTAGGTAT
                      ____________________________________________________________
consensus                                ACAAAGCGGTAAGGAAGTTATGGGAGCTTGATCTTAGGTAT
 
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rJMFF049J19+          CACACTTGGATCGAAGTCTCCACTCATCCCGACGCCCCCATGGATTGGTATGCTGCATTT
rJMFF050O15+                                       CGACGCCCCCATGGATTGGTATGCTGCATTT
                      ____________________________________________________________
consensus             CACACTTGGATCGAAGTCTCCACTCATCCCGACGCCCCCATGGATTGGTATGCTGCATTT
 
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rJMFF049J19+          GTCTCGGATAAAACCATGATATTTGGAGTGGAAATGTTCAAAATATTCGGACAGGTTCTC
rJMFF050O15+          GTCTCGGATAAAACCATGATATTTGGAGTGGAAATGTTCAAAATATTCGGACAGGTTCTC
                      ____________________________________________________________
consensus             GTCTCGGATAAAACCATGATATTTGGAGTGGAAATGTTCAAAATATTCGGACAGGTTCTC
 
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rJMFF049J19+          GACTTCCTGACAGTTTGTAACGTATCTGATGGCGAAACAAACTGGAGGCATATCTCGAGG
rJMFF050O15+          GACTTCCTGACAGTTTGTAACGTATCTGATGGCGAAACAAACTGGAGGCATATCTCGAGG
                      ____________________________________________________________
consensus             GACTTCCTGACAGTTTGTAACGTATCTGATGGCGAAACAAACTGGAGGCATATCTCGAGG
 
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rJMFF049J19+          AATCACGTGGCTCGTCAGCTTGATGCAACCTCGTGCATGACAAAATCGGTGGCAGTTCTA
rJMFF050O15+          AATCACGTGGCTCGTCAGCTTGATGCAACCTCGTGCATGACAAAATCGGTGGCAGTTCTA
                      ____________________________________________________________
consensus             AATCACGTGGCTCGTCAGCTTGATGCAACCTCGTGCATGACAAAATCGGTGGCAGTTCTA
 
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rJMFF049J19+          CACTTGTGAATTAGGAACCTTCGGATCATTTCACGATATTTGAAACCTAACCCACCCACC
rJMFF050O15+          CACTTGTGAATTAGGAACCTTCGGATCATTTCACGATATTTGAAACCTAACCCACCCACC
                      ____________________________________________________________
consensus             CACTTGTGAATTAGGAACCTTCGGATCATTTCACGATATTTGAAACCTAACCCACCCACC
 
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rJMFF049J19+          CCACCGGGGCTCATGGTATCTGCTCTTCATGTTACTATTTTGCTATATTCAGTCTGCATT
rJMFF050O15+          CCACCGGGGCTCATGGTATCTGCTCTTCATGTTACTATTTTGCTATATTCAGTCTGCATT
                      ____________________________________________________________
consensus             CCACCGGGGCTCATGGTATCTGCTCTTCATGTTACTATTTTGCTATATTCAGTCTGCATT
 
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rJMFF049J19+          GAGAAGTACACATTTGATGATGATAAATTGTTAACTGGCTCATATTTATATTCTCTCTTT
rJMFF050O15+          GAGAAGTACACATTTGATGATGATAAATTGTTAACTGGCTCATATTTATACTCTCTCTTT
                      ____________________________________________________________
consensus             GAGAAGTACACATTTGATGATGATAAATTGTTAACTGGCTCATATTTATATTCTCTCTTT
 
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rJMFF049J19+          TCATATTTATATATATATATTCTTTAAATGTCTGTATTGCCCTCTTGTATTGGTTTGTGA
rJMFF050O15+          TCATATTTATATATATATATTCTTTAAATGTCTGTATTGCCCTCTTGTATTGGTTTGTGA
                      ____________________________________________________________
consensus             TCATATTTATATATATATATTCTTTAAATGTCTGTATTGCCCTCTTGTATTGGTTTGTGA
 
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rJMFF049J19+          TAGAAAGAATAATTTATGGAGTTGTTGGTTTAACATATTGTAAACTGAGGTGTTTGGTGG
rJMFF050O15+          TAGAAAGAATAATTTATGGAGTTGTTGGTTTAACATATTGTAAACTGAGGTGTTTGGTGG
                      ____________________________________________________________
consensus             TAGAAAGAATAATTTATGGAGTTGTTGGTTTAACATATTGTAAACTGAGGTGTTTGGTGG
 
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rJMFF049J19+          AAAAATCATCCAATAATAGATTTTTCAATGTT                            
rJMFF050O15+          AAAAATCATCCAATAATAGATTTTTCAATGTTGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AAAAATCATCCAATAATAGATTTTTCAATGTTGAAAAAAAAAAAAAAAACTCTCCAGGGT