Contig 011221:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041O01Sequence655010292 (6)emb|CDP01270.1|6e-67unnamed protein product [Coffea canephora]555011221 (2)ref|XP_009800928.1|1e-30PREDICTED: cirhin-like [Nicotiana sylvestris]
JMFF050O03Sequence609010292 (6)emb|CDP01270.1|3e-64unnamed protein product [Coffea canephora]574011221 (2)ref|XP_009800928.1|3e-34PREDICTED: cirhin-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF041O01+                                     CAAGGGCAATGTGTGCGATTGAC-TTGGGGTGC
rJMFF050O03+                                    CCAAGGGCAATGTGTGCGATTGACTTTGGGGTGC
                      ____________________________________________________________
consensus                                       CCAAGGGCAATGTGTGCGATTGACTTTGGGGTGC
 
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rJMFF041O01+          CGGTTGAAGTAGACGATAATGACCTGGCAAACAGTCAGGAGTTGCTGTTACGGAAGATAC
rJMFF050O03+          CGGTTGAAGTAGACGATAATGACCTGGCAAACAGTCAGGAGTTGCTGTTACGGAAGATAC
                      ____________________________________________________________
consensus             CGGTTGAAGTAGACGATAATGACCTGGCAAACAGTCAGGAGTTGCTGTTACGGAAGATAC
 
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rJMFF041O01+          AGGGCACCCCTCTGAACGGAAAATTGAAGCGGAAGTTGAAAGGAACGGAGTTAGAGATGA
rJMFF050O03+          AGGGCACCCCTCTGAACGGAAAATTGAAGCGGAAGTTGAAAGGAACGGAGTTAGAGATGA
                      ____________________________________________________________
consensus             AGGGCACCCCTCTGAACGGAAAATTGAAGCGGAAGTTGAAAGGAACGGAGTTAGAGATGA
 
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rJMFF041O01+          GTCATCAACATTACGGTAGGAATAATTTTATATTTGGTGAATTCCGAGATCCTGTTTTAT
rJMFF050O03+          GTCATCAACATTACGGTAGGAATAATTTTATATTTGGTGAATTCCGAGATCCTGTTTTAT
                      ____________________________________________________________
consensus             GTCATCAACATTACGGTAGGAATAATTTTATATTTGGTGAATTCCGAGATCCTGTTTTAT
 
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rJMFF041O01+          TTCTCGGACATCTATCAAAAAGTTCAGTCTTGGTCATAGACAAACGATGGATTGACGTGG
rJMFF050O03+          TTCTCGGACATCTATCAAAAAGTTCAGTCTTGGTCATAGACAAACGATGGATTGACGTGG
                      ____________________________________________________________
consensus             TTCTCGGACATCTATCAAAAAGTTCAGTCTTGGTCATAGACAAACGATGGATTGACGTGG
 
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rJMFF041O01+          TTAAAACATTAGACGCACCGCCTGTTCACAGACATATTTTTGGCACGTAGTTACATCAAT
rJMFF050O03+          TTAAAACATTAGACGCACCGCCTGTTCACAGACATATTTTTGGCACGTAGTTACATCAAT
                      ____________________________________________________________
consensus             TTAAAACATTAGACGCACCGCCTGTTCACAGACATATTTTTGGCACGTAGTTACATCAAT
 
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rJMFF041O01+          ACAGGCGGTGGTTCTATTAACACATCACAGTAGTAGGGAAAAGCTTGCTCTAATGAGGAA
rJMFF050O03+          ACAGGCGGTGGTTCTATTAACACATCACAGTAGTAGGGAAAAGCTTGCTCTAATGAGGAA
                      ____________________________________________________________
consensus             ACAGGCGGTGGTTCTATTAACACATCACAGTAGTAGGGAAAAGCTTGCTCTAATGAGGAA
 
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rJMFF041O01+          AATCAAAGTACCTTTACTCTCAGCTCTTATTCCTTGTTGTCTGTCGGGGGTGTTGGGTGA
rJMFF050O03+          AATCAAAGTACCTTTACTCTCAGCTCTTATTCCTTGTTGTCTGTCGGGGGTGTTGGGTGA
                      ____________________________________________________________
consensus             AATCAAAGTACCTTTACTCTCAGCTCTTATTCCTTGTTGTCTGTCGGGGGTGTTGGGTGA
 
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rJMFF041O01+          AGGGGGCATTTTTCGTTTCTTTTACAAAGCCATGTTGTGTAATGTATTCCTTTGTTAACA
rJMFF050O03+          AGGGGGCATTTTTCGTTTCTTTTACAAAGCCATGTTGTGTAATGTATTCCTTTGTTAACA
                      ____________________________________________________________
consensus             AGGGGGCATTTTTCGTTTCTTTTACAAAGCCATGTTGTGTAATGTATTCCTTTGTTAACA
 
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rJMFF041O01+          TCTGAAATCAAATTTTTGAGTTCAATATAA                              
rJMFF050O03+          TCTGAAATCAAATTTTTGAGTTCAATATAATTCTTTTGATTTGCAGGTTATCTGCTCTGC
                      ____________________________________________________________
consensus             TCTGAAATCAAATTTTTGAGTTCAATATAATTCTTTTGATTTGCAGGTTATCTGCTCTGC