| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027I05 | Sequence | 527 | 000581 (4) | ref|XP_009615062.1| | 3e-67 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 716 | 011220 (3) | ref|XP_006360043.1| | 1e-120 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero |
| JMFF050N12 | Sequence | 597 | 000581 (4) | ref|XP_009615062.1| | 5e-84 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 436 | 011220 (3) | ref|XP_010327114.1| | 1e-28 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Solanum lycopersicu |
| JMSF049K13 | Sequence | 666 | 000581 (4) | ref|XP_009615062.1| | 2e-99 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi | 725 | 011220 (3) | ref|XP_006360043.1| | 6e-127 | PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero |
This contig is upended
. : . : . : . : . : . :
rJMSF049K13+ GACTACACGCACATATACANCAATAAAGGGCATGTGCC
rJMFF027I05+ GGGCATGTGCC
____________________________________________________________
consensus GACTACACGCACATATACANCAATAAAGGGCATGTGCC
. : . : . : . : . : . :
rJMSF049K13+ ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
rJMFF027I05+ ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
____________________________________________________________
consensus ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
. : . : . : . : . : . :
rJMSF049K13+ ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
rJMFF027I05+ ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
____________________________________________________________
consensus ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
. : . : . : . : . : . :
rJMSF049K13+ GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
rJMFF027I05+ GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
____________________________________________________________
consensus GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
. : . : . : . : . : . :
rJMSF049K13+ GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
rJMFF027I05+ GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
____________________________________________________________
consensus GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
. : . : . : . : . : . :
rJMSF049K13+ GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
rJMFF027I05+ GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
____________________________________________________________
consensus GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
. : . : . : . : . : . :
rJMSF049K13+ ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
rJMFF027I05+ ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
rJMFF050N12+ CAAGGCAAGGTTGATC
____________________________________________________________
consensus ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
. : . : . : . : . : . :
rJMSF049K13+ CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
rJMFF027I05+ CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
rJMFF050N12+ CTGCTCCCTTATTTTGTCCTTTTTCAGCTTTGACCGACGAAATCAACAGGGTTTTAAGGT
____________________________________________________________
consensus CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
. : . : . : . : . : . :
rJMSF049K13+ GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
rJMFF027I05+ GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
rJMFF050N12+ GTGCAGGACCCAAGGGTCATATCCTGAATTTAGGCCATGGAGTGCTTGTTGGCACACCCG
____________________________________________________________
consensus GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
. : . : . : . : . : . :
rJMSF049K13+ AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
rJMFF027I05+ AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
rJMFF050N12+ AGGAAGCTGTCGCTCATTTTTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
____________________________________________________________
consensus AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
. : . : . : . : . : . :
rJMSF049K13+ ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
rJMFF027I05+ ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
rJMFF050N12+ ACCACGCAGCTCAGGGGTTTAAAGTCCCAGCGTAAAGAACAGGCCAAATTATTATTATTA
____________________________________________________________
consensus ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
. : . : . : . : . : . :
rJMSF049K13+ TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
rJMFF027I05+ TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
rJMFF050N12+ TTATTACATCAGTAGGTCCCTTTTACTCCCCTGTTTCATGTTTTGTGTTTGAGATGGGAG
____________________________________________________________
consensus TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
. : . : . : . : . : . :
rJMSF049K13+ GAGTTTTCTGAA
rJMFF027I05+ GAGTTTTCTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGA
rJMFF050N12+ GAGTTTTTTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGAAGGAGTCAATTTTTT
____________________________________________________________
consensus GAGTTTTCTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGAAGGAGTCAATTTTTT
. : . : . : . : . : . :
rJMFF050N12+ TAGTTGTTGTATCATTGCCAATTTTTACTATTCAGGGGGCTTATATATTGTTTTTCAAGT
____________________________________________________________
consensus TAGTTGTTGTATCATTGCCAATTTTTACTATTCAGGGGGCTTATATATTGTTTTTCAAGT