Contig 011220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027I05Sequence527000581 (4)ref|XP_009615062.1|3e-67PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi716011220 (3)ref|XP_006360043.1|1e-120PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero
JMFF050N12Sequence597000581 (4)ref|XP_009615062.1|5e-84PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi436011220 (3)ref|XP_010327114.1|1e-28PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Solanum lycopersicu
JMSF049K13Sequence666000581 (4)ref|XP_009615062.1|2e-99PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic [Nicotiana tomentosi725011220 (3)ref|XP_006360043.1|6e-127PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Solanum tubero

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049K13+ GACTACACGCACATATACANCAATAAAGGGCATGTGCC
rJMFF027I05+ GGGCATGTGCC
                      ____________________________________________________________
consensus GACTACACGCACATATACANCAATAAAGGGCATGTGCC
 
. : . : . : . : . : . :
rJMSF049K13+ ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
rJMFF027I05+ ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
                      ____________________________________________________________
consensus ATACGGCTCCACATGTGCTGAAAGCACTTCTCTCTCATTTGACTAAGGCAATTACTGAAT
 
. : . : . : . : . : . :
rJMSF049K13+ ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
rJMFF027I05+ ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
                      ____________________________________________________________
consensus ATATCATTTATCAAGTTGAATCTGGAGCTCATTGCATACAAATATTTGATTCTTGGGGTG
 
. : . : . : . : . : . :
rJMSF049K13+ GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
rJMFF027I05+ GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
                      ____________________________________________________________
consensus GACAATTACCGCCTCATATGTGGGAGAGTTGGTCAAAACCTTACATTGATGAGATAGTAA
 
. : . : . : . : . : . :
rJMSF049K13+ GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
rJMFF027I05+ GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
                      ____________________________________________________________
consensus GTATAGTGAAGAGGAAGTGCCCACAAACACCGCTTGTGCTCTACATTAATGGAAATGGGG
 
. : . : . : . : . : . :
rJMSF049K13+ GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
rJMFF027I05+ GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
                      ____________________________________________________________
consensus GGCTCATTGAGCGGATGAAAACTACTGGAGTTGATGTAATTGGGCTTGACTGGACTGTAG
 
. : . : . : . : . : . :
rJMSF049K13+ ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
rJMFF027I05+ ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
rJMFF050N12+ CAAGGCAAGGTTGATC
                      ____________________________________________________________
consensus ATATGGCAGATGGAAGGAAGCGACTGGGAAGTGATATCAGCATACAAGGCAATGTTGATC
 
. : . : . : . : . : . :
rJMSF049K13+ CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
rJMFF027I05+ CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
rJMFF050N12+ CTGCTCCCTTATTTTGTCCTTTTTCAGCTTTGACCGACGAAATCAACAGGGTTTTAAGGT
                      ____________________________________________________________
consensus CTGCTACCTTATTTTGTCCTCTCTCAGCTTTGACCGACGAAATCAACAGGGTTGTAAGGT
 
. : . : . : . : . : . :
rJMSF049K13+ GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
rJMFF027I05+ GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
rJMFF050N12+ GTGCAGGACCCAAGGGTCATATCCTGAATTTAGGCCATGGAGTGCTTGTTGGCACACCCG
                      ____________________________________________________________
consensus GTGCAGGACCCAAGGGTCATATCCTGAATCTAGGCCATGGAGTGCTTGTTGGCACACCCG
 
. : . : . : . : . : . :
rJMSF049K13+ AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
rJMFF027I05+ AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
rJMFF050N12+ AGGAAGCTGTCGCTCATTTTTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
                      ____________________________________________________________
consensus AGGAAGCTGTCGCTCATTTCTTTGAAGTTGCAAGGAGTTTCGATTTTGATACAATTGAAA
 
. : . : . : . : . : . :
rJMSF049K13+ ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
rJMFF027I05+ ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
rJMFF050N12+ ACCACGCAGCTCAGGGGTTTAAAGTCCCAGCGTAAAGAACAGGCCAAATTATTATTATTA
                      ____________________________________________________________
consensus ACCACGCAGCTCAGGCGTCTAAAGTCACAGCGTAAAGAACAGGCCAAATTATTATTATTA
 
. : . : . : . : . : . :
rJMSF049K13+ TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
rJMFF027I05+ TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
rJMFF050N12+ TTATTACATCAGTAGGTCCCTTTTACTCCCCTGTTTCATGTTTTGTGTTTGAGATGGGAG
                      ____________________________________________________________
consensus TTATTACATCAGTAGCTCACTTCTACTCACCTGTTTCATGTCTTGTGTCTGAGATGGGAG
 
. : . : . : . : . : . :
rJMSF049K13+ GAGTTTTCTGAA
rJMFF027I05+ GAGTTTTCTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGA
rJMFF050N12+ GAGTTTTTTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGAAGGAGTCAATTTTTT
                      ____________________________________________________________
consensus GAGTTTTCTGAACATGGTAGGTCCTTTTAGGCCAATTAAGTAAGAAGGAGTCAATTTTTT
 
. : . : . : . : . : . :
rJMFF050N12+ TAGTTGTTGTATCATTGCCAATTTTTACTATTCAGGGGGCTTATATATTGTTTTTCAAGT
                      ____________________________________________________________
consensus TAGTTGTTGTATCATTGCCAATTTTTACTATTCAGGGGGCTTATATATTGTTTTTCAAGT