| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002N04 | Sequence | 572 | 001555 (3) | ref|XP_009606311.1| | 6e-74 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Nicotiana tomentosifor | 692 | 011215 (3) | ref|XP_009788298.1| | 2e-73 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Nicotiana sylvestris] |
| JMFF036G23 | Sequence | 580 | 001555 (3) | ref|XP_009606311.1| | 1e-73 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Nicotiana tomentosifor | 679 | 011215 (3) | ref|XP_011092703.1| | 9e-97 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Sesamum indicum] |
| JMFF050C22 | Sequence | 579 | 001555 (3) | ref|XP_009606311.1| | 4e-75 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Nicotiana tomentosifor | 478 | 011215 (3) | ref|XP_011092703.1| | 7e-60 | PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF002N04+ ACTTAAACACCGCCATTCA
____________________________________________________________
consensus ACTTAAACACCGCCATTCA
. : . : . : . : . : . :
rJMFF036G23+ CGAGCTGGTCTGAAGCGTTCGAATGGTTGGATAACCAAAGACC
rJMFF002N04+ GCCCGGAACCAATTCATCGAGCTGGTCTGAAGCGTTCGAATGGTTGGATAACCAAAGACC
____________________________________________________________
consensus GCCCGGAACCAATTCATCGAGCTGGTCTGAAGCGTTCGAATGGTTGGATAACCAAAGACC
. : . : . : . : . : . :
rJMFF036G23+ GAAGTCTGTGGTCTTTGTCGGTTTCGGGAGCGAGTACAAGATGCCTATTCACCAAATCCA
rJMFF002N04+ GAAGTCTGTGGTCTTTGTCGGTTTCGGAAGCGAGTACAAGATGCNTATTCACCAAATCCA
____________________________________________________________
consensus GAAGTCTGTGGTCTTTGTCGGTTTCGGGAGCGAGTACAAGATGCCTATTCACCAAATCCA
. : . : . : . : . : . :
rJMFF036G23+ CGAATTGGCTTCTGCACTGGAGCTTTCCCGGATGCCTTTCCTATGGATTCTGAGGAAACC
rJMFF002N04+ CGAATTGGCTTCTGCACTGGAGCTTTCCCGGATGCCTTTCCTATGGATTCTGAGGAAACC
____________________________________________________________
consensus CGAATTGGCTTCTGCACTGGAGCTTTCCCGGATGCCTTTCCTATGGATTCTGAGGAAACC
. : . : . : . : . : . :
rJMFF036G23+ GGGAATAGATAACCCCGGTTACCCCGCCCTGTTGCCTACGGATTTCGTTAACAGAACCTC
rJMFF002N04+ GGGAATAGATAACCCCGGTTACCCCGCCCTGTTGCCTACGGATTTCGTTAACAGAACCTC
____________________________________________________________
consensus GGGAATAGATAACCCCGGTTACCCCGCCCTGTTGCCTACGGATTTCGTTAACAGAACCTC
. : . : . : . : . : . :
rJMFF036G23+ AAACCAGGGCAGAGTTATCCTCGGTTGGGCTCCTCAACAGAACATACTCGCCCATCCCGC
rJMFF002N04+ AAACCAGGGCAGAGTTATCCTCGGTTGGGCTCCTCAACAGAACATACTCGCCCATCCCGC
rJMFF050C22+ ACCAGGGCAGAGTTATCCTCGGTTGGGCTCCTCAACAGAACATACTCGCCCATCCCGC
____________________________________________________________
consensus AAACCAGGGCAGAGTTATCCTCGGTTGGGCTCCTCAACAGAACATACTCGCCCATCCCGC
. : . : . : . : . : . :
rJMFF036G23+ CATTGGCGGGTGCCTGTTCCATTCCGGGTGGGGTACGATAATTGAGTCCCTTGGATTCGG
rJMFF002N04+ CATTGGCGGGTGCCTGTTCCATTCCGGGTGGGGTACGATAATTGAGTCCCTTGGATTCGG
rJMFF050C22+ CATTGGCGGGTGCCTGTTCCATTCCGGGTGGGGTACGATAATTGAGTCCCTTGGATTCGG
____________________________________________________________
consensus CATTGGCGGGTGCCTGTTCCATTCCGGGTGGGGTACGATAATTGAGTCCCTTGGATTCGG
. : . : . : . : . : . :
rJMFF036G23+ GCACCCACTCATCCTGCTGCCAATGGTAGCCGACCAAGGACTCAACGCTAAGCTGTTAGT
rJMFF002N04+ GCACCCACTCATCCTGCTGCCAATGGTAGCCGACCAAGGACTCAACGCTAAGCT-TTAGT
rJMFF050C22+ GCACCCACTCATCCTGCTGCCAATGGTAGCCGACCAAGGACTCAACGCTAAGCTGTTAGT
____________________________________________________________
consensus GCACCCACTCATCCTGCTGCCAATGGTAGCCGACCAAGGACTCAACGCTAAGCTGTTAGT
. : . : . : . : . : . :
rJMFF036G23+ CGAAAAGGAAATAGGGTACGAGGTTCCTAGGAGAGAAGACGGCTCCTTCAGCCGGGACAT
rJMFF002N04+ CGAAAAGGAAATAGGGTACGAGGTTCCTAGGAGAGAAGACGGCTCCTTCAGCCGGGACAT
rJMFF050C22+ CGAAAAGGAAATAGGGTACGAGGTTCCTAGGAGAGAAGACGGCTCCTTCAGCCGGGACAT
____________________________________________________________
consensus CGAAAAGGAAATAGGGTACGAGGTTCCTAGGAGAGAAGACGGCTCCTTCAGCCGGGACAT
. : . : . : . : . : . :
rJMFF036G23+ GGTAGCCAACTCAATAAGATCGGTAATGGCATCCCGAGAGGGAGAAGGAATAAGGCTGAA
rJMFF002N04+ GGTAGCCAACTCAATAAGATCGGTAATGGCATCCCGAGAGGGAGAAGGAATAAGGCTGAA
rJMFF050C22+ GGTAGCCAACTCAATAAGATCGGTAATGGCATCCCGAGAGGGAGAAGGAATAAGGCTGAA
____________________________________________________________
consensus GGTAGCCAACTCAATAAGATCGGTAATGGCATCCCGAGAGGGAGAAGGAATAAGGCTGAA
. : . : . : . : . : . :
rJMFF036G23+ GGCCGCTCAAATGGCAAACATATTTGGCAACCACAATCTCCACGACAACTACATAGATCA
rJMFF002N04+ GGCCGCTCAAATGGCAAACATATTTGGCAACCACAATCTCCACGACAACTACATAGATCA
rJMFF050C22+ GGCCGCTCAAATGGCAAACATATTTGGCAACCACAATCTCCACGACAACTACATAGATCA
____________________________________________________________
consensus GGCCGCTCAAATGGCAAACATATTTGGCAACCACAATCTCCACGACAACTACATAGATCA
. : . : . : . : . : . :
rJMFF036G23+ GTTCATTGAGTATTTCCAATCAAAAATTTTAACACAATGCAAAAGAGGCTAGAACACATG
rJMFF002N04+ GTTCATTGAGTATTTCCAATCAAAAATTTTAACACAATGCAAAAGAGGCTAGAACACATG
rJMFF050C22+ GTTCATTGAGTATTTCCAATCAAAAATTTTAACACAATGCAAAAGAGGCTAGAACACATG
____________________________________________________________
consensus GTTCATTGAGTATTTCCAATCAAAAATTTTAACACAATGCAAAAGAGGCTAGAACACATG
. : . : . : . : . : . :
rJMFF036G23+ CACAAGTACACAAA
rJMFF002N04+ CACAAGTACACAAA
rJMFF050C22+ CACAAGTACACAAATATTATTXXXXXXXXXXXXXXXXXXXCAATAAGACATATTAAATCG
____________________________________________________________
consensus CACAAGTACACAAATATTATTNNNNNNNNNNNNNNNNNNNCAATAAGACATATTAAATCG