| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF045P03 | Sequence | 622 | 007644 (5) | ref|XP_011081956.1| | 2e-79 | PREDICTED: 3-ketoacyl-CoA synthase 10 [Sesamum indicum] | 590 | 011214 (4) | ref|XP_010049293.1| | 7e-47 | PREDICTED: 3-ketoacyl-CoA synthase 10 [Eucalyptus grandis] gb|KCW81820.1| hypoth |
| JMFF049P23 | Sequence | 622 | 007644 (5) | ref|XP_011081956.1| | 9e-78 | PREDICTED: 3-ketoacyl-CoA synthase 10 [Sesamum indicum] | 355 | 011214 (4) | ref|XP_009594847.1| | 1e-16 | PREDICTED: 3-ketoacyl-CoA synthase 10 [Nicotiana tomentosiformis] |
| JMSF027I13 | Sequence | 747 | 011214 (4) | emb|CDP17887.1| | 3e-92 | unnamed protein product [Coffea canephora] | |||||
| JMSF034E20 | Sequence | 741 | 011214 (4) | emb|CDP17887.1| | 3e-109 | unnamed protein product [Coffea canephora] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF034E20+ CTCGAGCACATTGTCCGGACTCACNAAGGCGCCGATGATC
____________________________________________________________
consensus CTCGAGCACATTGTCCGGACTCACNAAGGCGCCGATGATC
. : . : . : . : . : . :
rJMSF034E20+ GTGCTTTCAGGTCCATCTACCAAGAAGAAGATGAAGAACGCCACAAGGGGCTGAAGATAA
rJMSF027I13+ AAGATGAAGAACGCCACAAGGGGCTGAAGATAA
____________________________________________________________
consensus GTGCTTTCAGGTCCATCTACCAAGAAGAAGATGAAGAACGCCACAAGGGGCTGAAGATAA
. : . : . : . : . : . :
rJMSF034E20+ GCAAAGACTTGATTGAAATAGGAGGAGATGCACTGAAGACCAACATCACCACACTAGGCC
rJMSF027I13+ GCAAAGACTTGATTGAAATAGGAGGAGATGCACTGAAGACCAACATCACCACACTAGGCC
____________________________________________________________
consensus GCAAAGACTTGATTGAAATAGGAGGAGATGCACTGAAGACCAACATCACCACACTAGGCC
. : . : . : . : . : . :
rJMSF034E20+ CTCTAGTCCTCCCATTCTCCGAGCAGCTCTTCTTCTTCGCAACCCTAATTTGGACCCACA
rJMFF045P03+ CA
rJMSF027I13+ CTCTAGTCCTCCCATTCTCCGAGCAGCTCTTCTTCTTCGCAACCCTAATTTGGACCCACA
____________________________________________________________
consensus CTCTAGTCCTCCCATTCTCCGAGCAGCTCTTCTTCTTCGCAACCCTAATTTGGACCCACA
. : . : . : . : . : . :
rJMSF034E20+ TTTTCCCCTCCAAGAAAGCGCCAAACAAGCCCTACATCCCCGACTACAAGCTAGCATTCG
rJMFF045P03+ TTTTCCCCTCCAAGAAAGCGCCAAACAAGCCCTACATCCCCGACTACAAGCTAGCATTCG
rJMSF027I13+ TTTTCCCCTCCAAGAAAGCGCCAAACAAGCCCTACATCCCCGACTACAAGCTAGCATTCG
____________________________________________________________
consensus TTTTCCCCTCCAAGAAAGCGCCAAACAAGCCCTACATCCCCGACTACAAGCTAGCATTCG
. : . : . : . : . : . :
rJMSF034E20+ ACCACTTTTGCGTCCACCCCGCCGGCAAGGCTGTCCTGGACGAGCTCCAGCGCAACCTAG
rJMFF045P03+ ACCACTTTTGCGTCCACCCCGCCGGCAAGGCTGTCCTGGACGAGCTCCAGCGCAACCTAG
rJMSF027I13+ ACCACTTTTGCGTCCACCCCGCCGGCAAGGCTGTCCTGGACGAGCTCCAGCGCAACCTAG
____________________________________________________________
consensus ACCACTTTTGCGTCCACCCCGCCGGCAAGGCTGTCCTGGACGAGCTCCAGCGCAACCTAG
. : . : . : . : . : . :
rJMSF034E20+ GGTTGAGCGACAACAACATGGAGGCGTCCAGGGCGGCCCTTCACCGCTTCGGGAACAATT
rJMFF045P03+ GGTTGAGCGACAACAACATGGAGGCGTCCAGGGCGGCCCTTCACCGCTTCGGGAACAATT
rJMSF027I13+ GGTTGAGCGACAACAACATGGAGGCGTCCAGGGCGGCCCTTCACCGCTTCGGGAACAATT
____________________________________________________________
consensus GGTTGAGCGACAACAACATGGAGGCGTCCAGGGCGGCCCTTCACCGCTTCGGGAACAATT
. : . : . : . : . : . :
rJMSF034E20+ CCAGCAGCAGCATATGGTACGAGCTGGCGTATCTGGAGGCCAAGGGGAGAGTGAAACGAG
rJMFF045P03+ CCAGCAGCAGCATATGGTACGAGCTGGCGTATCTGGAGGCCAA-GTGAGAGTGAAACGAG
rJMSF027I13+ CCAGCAGCAGCATATGGTACGAGCTGGCGTATCTGGAGGCCAAGGGGAGAGTGAAACGAG
____________________________________________________________
consensus CCAGCAGCAGCATATGGTACGAGCTGGCGTATCTGGAGGCCAAGGGGAGAGTGAAACGAG
. : . : . : . : . : . :
rJMSF034E20+ GCCATCGTGTTTGGCAAATTGCCTTTGGCTCAGGTTTCAAGTGCAACAGCGCTGTTTGGA
rJMFF045P03+ GCCATCGTGTTTGGCAAATTGCCTTTGGCTCAGGTTTCAAGTGCAACAGCGCTGTTTGGA
rJMSF027I13+ GCCATCGTGTTTGGCAAATTGCCTTTGGCTCAGGTTTCAAGTGCAACAGCGCTGTTTGGA
rJMFF049P23+ TCGTGTTTGGCAAATTGCCTTTGGCTCAGGTTTCAAGTGCAACAGCGCTGTTTGGA
____________________________________________________________
consensus GCCATCGTGTTTGGCAAATTGCCTTTGGCTCAGGTTTCAAGTGCAACAGCGCTGTTTGGA
. : . : . : . : . : . :
rJMSF034E20+ AGGCGATGAGGCGTGTTGGGACGGCGGGAGGGAATCCTTGGCTCGATTGTGTTGATAGAT
rJMFF045P03+ AGGCGATGAGGCGTGTTGGGACGGCGGGAGGGAATCCTTGGCTCGATTGTGTTGATAGAT
rJMSF027I13+ AGGCGATGAGGCGTGTTGGGACGGCGGGAGGGAATCCTTGGCTCGATTGTGTTGATAGAT
rJMFF049P23+ AGGCGATGAGGCGTGTTGGGACGGCGGGAGGGAATCCTTGGCTCGATTGTGTTGATAGAT
____________________________________________________________
consensus AGGCGATGAGGCGTGTTGGGACGGCGGGAGGGAATCCTTGGCTCGATTGTGTTGATAGAT
. : . : . : . : . : . :
rJMSF034E20+ ACCCTCAGGCTCTCTACTCCCCTTAGAAAGCTATTCATGGTAGCAAATTAATTATAACGT
rJMFF045P03+ ACCCTCAGGCTCTCTACTCCCCTTAGAAAGCTATTCATGGTAGCAAATTAATTATAACGT
rJMSF027I13+ ACCCTCAGGCTCTCTACTCCCCTTAGAAAGCTATTCATGGTAGCAAATTAATTATAACGT
rJMFF049P23+ ACCCTCAGGCTCTTTACTCCCCTTAGAAAGCTATTCATGGTAGCAAATTAATTATAACGT
____________________________________________________________
consensus ACCCTCAGGCTCTCTACTCCCCTTAGAAAGCTATTCATGGTAGCAAATTAATTATAACGT
. : . : . : . : . : . :
rJMSF034E20+ CAACCTTTCAACATTGAAGTGGAAGCTAGGCTTCACCTTGAAATTTATAATAATGGTTAC
rJMFF045P03+ CAACCTTTCAACATTGAAGTGGAAGCTAGGCTTCACCTTGAAATTTATAATAATGGTTAC
rJMSF027I13+ CAACCTTTCAACATTGAAGTGGAAGCTAGGCTTCACCTTGAAATTTATAATAATGGTTAC
rJMFF049P23+ CACCCTTTCACCATTGAAGTGGAAGCTAGGCTTCCCCTTGAAATTTATAATAATGG-TCC
____________________________________________________________
consensus CAACCTTTCAACATTGAAGTGGAAGCTAGGCTTCACCTTGAAATTTATAATAATGGTTAC
. : . : . : . : . : . :
rJMSF034E20+ ACTGCAATTTCTATAATTTCGTGTGTAATAGTATTGCATGT
rJMFF045P03+ ACTGCAATTTCTATAATTTCGTGTGTAATAGTATTGCATGTTTAGTGAAATTGTATTATT
rJMSF027I13+ ACTGCAATTTCTATAATTTCGTGTGTAATAGTATTGCATGTTTAGTGAAATTGTATTATT
rJMFF049P23+ CCTGCAATTTCTATAATTTCGGGTGTAATAGTATTGCATGTTTAGTGAAATTGTATTATT
____________________________________________________________
consensus ACTGCAATTTCTATAATTTCGTGTGTAATAGTATTGCATGTTTAGTGAAATTGTATTATT
. : . : . : . : . : . :
rJMFF045P03+ GCTTATATAAAAGTTACTTATGGTA
rJMSF027I13+ GCTTATATAAAAGTTACTTATGGTA
rJMFF049P23+ GCTTATATAAAAGTTACTTATGGTATTGTTACGTATTACTTTATAATTAAATGTTTTTAT
____________________________________________________________
consensus GCTTATATAAAAGTTACTTATGGTATTGTTACGTATTACTTTATAATTAAATGTTTTTAT