Contig 011213:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF002K16+            TNTAGAGAGGAATAGCCAAANCCATTGGAACAAAGCGATTCTGAACCTGACACAAAAC
                      ____________________________________________________________
consensus               TNTAGAGAGGAATAGCCAAANCCATTGGAACAAAGCGATTCTGAACCTGACACAAAAC
 
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rJMFF002K16+          GTGAGGAAAGTGATCACGGAGATGGACGAGGAGCTCGTGTGTGCCTGCCAAAGCAAACTC
                      ____________________________________________________________
consensus             GTGAGGAAAGTGATCACGGAGATGGACGAGGAGCTCGTGTGTGCCTGCCAAAGCAAACTC
 
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rJMFF002K16+          GAGGAAGAGAAGTCGTTGTCGAATGTGGTTGCGGAGAGACGAAGGCTGACATGGGAACAC
                      ____________________________________________________________
consensus             GAGGAAGAGAAGTCGTTGTCGAATGTGGTTGCGGAGAGACGAAGGCTGACATGGGAACAC
 
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rJMFF002K16+          CTCGACGTTATTGCTGCTAGCAATATTTCAGCTCTAACTAAACCCGCAAATGCAAGCTGT
rJMFF049L22+                                   TTTCAGCTCTAACTAAACCCGCAAATGCAAGCTGT
                      ____________________________________________________________
consensus             CTCGACGTTATTGCTGCTAGCAATATTTCAGCTCTAACTAAACCCGCAAATGCAAGCTGT
 
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rJMFF002K16+          CTCGTTAGTTGTTAGATGATTGAGCATCAACGAACGCCATCCGTCTCTTGGATATACTTC
rJMFF049L22+          CTCGTTAGTTGTTAGATGATTGAGCATCAACGAACGCCATCCGTCTCTTGGATATACTTC
                      ____________________________________________________________
consensus             CTCGTTAGTTGTTAGATGATTGAGCATCAACGAACGCCATCCGTCTCTTGGATATACTTC
 
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rJMFF002K16+          AATCCTTTCCTCTCGAAAGCGGGAAAAGCAGCAGATCAGTCGTCTCTTGGATACGGGGAT
rJMFF049L22+          AATCCTTTCCTCTCGAAAGCGGGAAAAGCAGCAGATCAGTCGTCTCTTGGATACGGGGAT
                      ____________________________________________________________
consensus             AATCCTTTCCTCTCGAAAGCGGGAAAAGCAGCAGATCAGTCGTCTCTTGGATACGGGGAT
 
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rJMSF004I20+                                          CAAAGCCGTGTCAAGTGGATGAGAAAGC
rJMFF002K16+          GTACATACATATATACAATTCCCCCAGGATACCAAAGCCGTGTCAAGTGGATGAGAAAGC
rJMFF049L22+          GTACATACATATATACAATTCCCCCGGGATACCAAAGCCGTGTCAAGTGGATGAGAAAGC
                      ____________________________________________________________
consensus             GTACATACATATATACAATTCCCCCGGGATACCAAAGCCGTGTCAAGTGGATGAGAAAGC
 
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rJMSF004I18+                                                 TTAATGGAAGAAAAGTCCAAT
rJMSF004I20+          GGTTCCTCTACCTTGAATTAATGCTTACTCTTCTGGATTTTAATGGNAGAAAANTCCAAT
rJMFF002K16+          GGTTCCTCTACCTTGAATTAATGCTTACTCTTCTGGATTTTAATGGAAGAAAAGTCCAAT
rJMFF049L22+          GGTTCCTCTACCTTGAATTAATGCTTACTCTTCTGGATTTTAATGGAAGAAAAGTCCAAT
                      ____________________________________________________________
consensus             GGTTCCTCTACCTTGAATTAATGCTTACTCTTCTGGATTTTAATGGAAGAAAAGTCCAAT
 
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rJMSF004I18+          GGGGTTATGCCCAGCAACATCTAGAGCTCTTACAATGGGGTTACCAAGGGATCAGGGATA
rJMSF004I20+          GGGGTNATGCCCAGCAACATNTAGAGCTCTTACAATGGGGTTACCANGGGATCAGGGANA
rJMFF002K16+          GGGGTTATGCCCAGCAACATCTAGAGCTCTTACAATGGGGTTACCAAGGGATCAGGGATA
rJMFF049L22+          GGGGTTATGCCCAGCAACATCTAGAGCTCTTACAATGGGGTTACCAAGGGATCAGGGATA
                      ____________________________________________________________
consensus             GGGGTTATGCCCAGCAACATCTAGAGCTCTTACAATGGGGTTACCAAGGGATCAGGGATA
 
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rJMSF004I18+          TGGAGGTCACCAGATTATGTTATTATAAGTATGTTTTAGCCATTTGGTTTGGGAGATTAA
rJMSF004I20+          TNGAGGTCACCAGNTTANGTTATTATAAGTATGTNTTAGCCATTTGGTNTGGGA      
rJMFF002K16+          TGGAGGTCACCAGATTATGTTATTATAAGTATGTTTTAGCCATTTGGTTTGGGAGATTAA
rJMFF049L22+          TGGAGGTCACCAGATTATGTTATTATAAGTATGTTTTAGCCATTTGGTTTGGGAGATTAA
                      ____________________________________________________________
consensus             TGGAGGTCACCAGATTATGTTATTATAAGTATGTTTTAGCCATTTGGTTTGGGAGATTAA
 
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rJMSF004I18+          TAGCTAATGCACCATGAATGTTCAT                                   
rJMFF002K16+          TAGCTAATGCACCATGAATGTTCATCATATTTGTCTCTTTTCTTTTCATCTTTTTCTTAT
rJMFF049L22+          TAGCTAATGCACCATGAATGTTCATCATATTTGTCTCTTTTCTTTTCATCTTTTTCTTAT
                      ____________________________________________________________
consensus             TAGCTAATGCACCATGAATGTTCATCATATTTGTCTCTTTTCTTTTCATCTTTTTCTTAT
 
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rJMFF002K16+          ATTACATAGTATGAGGTGGAAAAGCTGTATGTGTTGATTGTTAGCAAGCAAGCATGCACT
rJMFF049L22+          ATTACATAGTATGAGGTGGAAAAGCTGTATGTGTTGATTGTTAGCAAGCAAGCATGCACT
                      ____________________________________________________________
consensus             ATTACATAGTATGAGGTGGAAAAGCTGTATGTGTTGATTGTTAGCAAGCAAGCATGCACT
 
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rJMFF002K16+          GTAAGTAAGTCTTTGTATGAGTTGGGAGATTAAGTAGC                      
rJMFF049L22+          GTAAGTAAGTCTTTGTATGAGTTGGGAGATTAAGTAGCTGCTAGCTAGTTCTTTGCATCG
                      ____________________________________________________________
consensus             GTAAGTAAGTCTTTGTATGAGTTGGGAGATTAAGTAGCTGCTAGCTAGTTCTTTGCATCG