Contig 011212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001E05Sequence560007269 (7)ref|XP_009625296.1|7e-18PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]714011212 (3)ref|XP_010312439.1|1e-106PREDICTED: GRAS1 protein isoform X1 [Solanum lycopersicum]
JMFF031N14Sequence590007269 (7)ref|XP_009625296.1|1e-24PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]696011212 (3)ref|XP_010312439.1|4e-96PREDICTED: GRAS1 protein isoform X1 [Solanum lycopersicum]
JMFF049I02Sequence617007269 (7)ref|XP_009625296.1|9e-28PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]713011212 (3)ref|XP_006365847.1|5e-37PREDICTED: scarecrow-like protein 13-like isoform X1 [Solanum tuberosum] ref|XP

Alignment

This contig is upended


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rJMFF001E05+                                                                ACCCGG
                      ____________________________________________________________
consensus                                                                   ACCCGG
 
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rJMFF001E05+          GGAAGCACTCGCGGTTAACTTCCCTTACATGTTACATCACATGCCCGACGAGAGTGTGAG
rJMFF031N14+                                        GTTACATCACATGCCCGACGAGAGTGTGAG
                      ____________________________________________________________
consensus             GGAAGCACTCGCGGTTAACTTCCCTTACATGTTACATCACATGCCCGACGAGAGTGTGAG
 
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rJMFF001E05+          CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
rJMFF031N14+          CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
                      ____________________________________________________________
consensus             CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
 
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rJMFF001E05+          CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
rJMFF031N14+          CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
                      ____________________________________________________________
consensus             CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
 
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rJMFF001E05+          AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
rJMFF031N14+          AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
                      ____________________________________________________________
consensus             AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
 
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rJMFF001E05+          CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
rJMFF031N14+          CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
rJMFF049I02+                                                GGGATATCGTCAACATAATAGC
                      ____________________________________________________________
consensus             CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
 
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rJMFF001E05+          ATGCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
rJMFF031N14+          ATTCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
rJMFF049I02+          ATTTGGGGGGGGTGATCGAGTGGAAAGACCCGAACCGTTTGGCAAGTGGAGTATGAGATT
                      ____________________________________________________________
consensus             ATTCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
 
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rJMFF001E05+          TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
rJMFF031N14+          TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
rJMFF049I02+          TTCGATGGGGGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGGGAGGCCATGAGGCC
                      ____________________________________________________________
consensus             TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
 
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rJMFF001E05+          CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
rJMFF031N14+          CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
rJMFF049I02+          CATGTTGCAGGAATATAGCCCGAATTTTGGGATTGCACAAGGCCATGGCGCATTGTATTT
                      ____________________________________________________________
consensus             CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
 
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rJMFF001E05+          TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
rJMFF031N14+          TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
rJMFF049I02+          TGGATGGAAGAACCGCGCTTTGGCATTTTCCTCAGGCTGGAGATGATACACTCCCCCGAC
                      ____________________________________________________________
consensus             TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
 
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rJMFF001E05+          GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
rJMFF031N14+          GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
rJMFF049I02+          GGTTTTCAACTTTTTGTAAATTTTGCATACCCGGCCGATTTTTAACCTTTTCGCCTTTGC
                      ____________________________________________________________
consensus             GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
 
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rJMFF001E05+          CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
rJMFF031N14+          CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
rJMFF049I02+          CTTGGTATGATTAGAACAGAGTTTTTTTTTGAACTATTAGGCTTCATATAGAAAGGGCCC
                      ____________________________________________________________
consensus             CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
 
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rJMFF001E05+          TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACA             
rJMFF031N14+          TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACATGATTACCAGATA
rJMFF049I02+          TTTGCTAAAGTGTTTTTGTTTGTCAATACCTCAGAACAATTTTAACACGCTTACCAGATA
                      ____________________________________________________________
consensus             TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACATGCTTACCAGATA
 
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rJMFF031N14+          CAATTA                                                      
rJMFF049I02+          CAATTATGTTCCAGTTTTTTACTCTCTTGTTGAGGTTACATAAACTGAATTTTTGTGGGG
                      ____________________________________________________________
consensus             CAATTATGTTCCAGTTTTTTACTCTCTTGTTGAGGTTACATAAACTGAATTTTTGTGGGG
 
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rJMFF049I02+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCAGGGTTGGAT
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCAGGGTTGGAT