Contig 011207:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003O13Sequence730011207 (2)ref|XP_006375551.1|6e-80hypothetical protein POPTR_0014s16040g [Populus trichocarpa] gb|ERP53348.1| hypo
JMFF048M03Sequence517008888 (2)ref|XP_008245681.1|3e-27PREDICTED: exopolygalacturonase clone GBGA483-like [Prunus mume]566011207 (2)ref|XP_006279044.1|1e-34hypothetical protein CARUB_v100165411mg, partial [Capsella rubella] gb|EOA11942.

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+                                                  CCCGGCGATGACTGCGTGTC
                      ____________________________________________________________
consensus                                                     CCCGGCGATGACTGCGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          CTTGGGCGACGGCGTCCAGGATGTGCACGTGGAGAAGGTGACCTGCGGTCCCGGCCACGG
                      ____________________________________________________________
consensus             CTTGGGCGACGGCGTCCAGGATGTGCACGTGGAGAAGGTGACCTGCGGTCCCGGCCACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          GCTGGCCATCGGAAGCCTGGGCAAGTACCCCAACGAGAAACCCGTCTTGGGAGTCACCGT
                      ____________________________________________________________
consensus             GCTGGCCATCGGAAGCCTGGGCAAGTACCCCAACGAGAAACCCGTCTTGGGAGTCACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          CAAGAACTGCACCCTCACCAATACACTGAACGGCGCCCGGATCAAGACGTGGCCCGGCTC
                      ____________________________________________________________
consensus             CAAGAACTGCACCCTCACCAATACACTGAACGGCGCCCGGATCAAGACGTGGCCCGGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          CCCGGTCGGCAGCGCCACCAACATGCACTTCGAAGACATCATCATGAACAACGTCTCCAA
rJMFF048M03+                                            GACATCATCATGAACAACGTCTCCAA
                      ____________________________________________________________
consensus             CCCGGTCGGCAGCGCCACCAACATGCACTTCGAAGACATCATCATGAACAACGTCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          TCCTATCCTCATCGATCAACAATATTGCCCATGGAATCAATGCAAAGCCGGGCTTGCGTC
rJMFF048M03+          TCCTATCCTCATGGATCAACAATATTGCCCATGGAATCAATGCAAAGCCGGGCTTGCGTC
                      ____________________________________________________________
consensus             TCCTATCCTCATGGATCAACAATATTGCCCATGGAATCAATGCAAAGCCGGGCTTGCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          GAAAGTGAAGCTGAGCGGCATCGGATTCAAGAACATAAAGGGGACGTCGTCGAGCAAGAT
rJMFF048M03+          GAAAGTGAAGCTGAGCGGCATCGGATTCAAGAACATAAAGGGGACGTCGTCGAGCAAGAT
                      ____________________________________________________________
consensus             GAAAGTGAAGCTGAGCGGCATCGGATTCAAGAACATAAAGGGGACGTCGTCGAGCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          GGCGATGAAGATAGATTGCAGCCCGGCGGTACCGTGCCAGGGTGTAGTGATGAACGATAT
rJMFF048M03+          GGCGATGAAGATAGATTGCAGCCCGGCGGTACCGTGCCAGGGTGTAGTGATGAACGATAT
                      ____________________________________________________________
consensus             GGCGATGAAGATAGATTGCAGCCCGGCGGTACCGTGCCAGGGTGTAGTGATGAACGATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          CAATTTGATTTACAAGGGAAAGGATGGATCGGCAGTCTCTAAATGCACCAACGTCAAGCC
rJMFF048M03+          CAATTTGATTTACAAGGGAAAGGATGGATCGGCAGTCTCTAAATGCACCAACGTCAAGCC
                      ____________________________________________________________
consensus             CAATTTGATTTACAAGGGAAAGGATGGATCGGCAGTCTCTAAATGCACCAACGTCAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          TTCCATCATCGGAAAAGTCGTCCCAGCGGCTTGCTCTGTCCATAAGTAGAAAATACCGGC
rJMFF048M03+          TTCCATCATCGGAAAAGTCGTCCCAGCGGCTTGCTCTGTCCATAAGTAGAAAATACCGGC
                      ____________________________________________________________
consensus             TTCCATCATCGGAAAAGTCGTCCCAGCGGCTTGCTCTGTCCATAAGTAGAAAATACCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          CGGTATCAGTACTGTACTGTATAAATAAATAACTGTTGGGGCCTANTAGTCGTACGTATA
rJMFF048M03+          CGGTATCAGTACTGTACTGTATAAATAAATAACTGTTGGGGCCTACTAGTCGTACGTATA
                      ____________________________________________________________
consensus             CGGTATCAGTACTGTACTGTATAAATAAATAACTGTTGGGGCCTACTAGTCGTACGTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          ACCAACAAAGGCTGGCCTATTGTCCCGCCATTTTTTATTTTNTATNTTTTATTNTAGTTA
rJMFF048M03+          ACCAACAAAGGCTGGCCTATTGTCCCGCCATTTTTTATTTTTTATTTTTTATTTTAGTTA
                      ____________________________________________________________
consensus             ACCAACAAAGGCTGGCCTATTGTCCCGCCATTTTTTATTTTTTATTTTTTATTTTAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF003O13+          TTGTCCCGCCACTTTAGAATCTATGTAATAATGCTATTATATAGATTATA          
rJMFF048M03+          TTGTCCCGCCACTTTAGAATCTATGTAATAATGCTATTATATAGATTATATAGATTTACT
                      ____________________________________________________________
consensus             TTGTCCCGCCACTTTAGAATCTATGTAATAATGCTATTATATAGATTATATAGATTTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF048M03+          TATAAATGAAAACAATTTAAATATTTTTACTACAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TATAAATGAAAACAATTTAAATATTTTTACTACAAAAAAAAAAAAAAAACTCTCCAGGGT