| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022B18 | Sequence | 506 | 009274 (5) | ref|XP_006350582.1| | 8e-31 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 737 | 011206 (4) | emb|CDP05091.1| | 1e-78 | unnamed protein product [Coffea canephora] |
| JMFF048D13 | Sequence | 381 | 009274 (5) | ref|XP_006350582.1| | 2e-18 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 369 | 011206 (4) | gb|KCW90557.1| | 2e-36 | hypothetical protein EUGRSUZ_A026652, partial [Eucalyptus grandis] gb|KCW90558.1 |
| JMSF017I17 | Sequence | 485 | 009274 (5) | ref|XP_006350582.1| | 7e-30 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 750 | 011206 (4) | ref|XP_004308009.1| | 2e-100 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Fraga |
| JMSF052M12 | Sequence | 553 | 009274 (5) | ref|XP_006350582.1| | 2e-30 | PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [ | 908 | 011206 (4) | emb|CDP05091.1| | 1e-146 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF052M12+ AGCTGAAGCAACAAATATAGATGTCGTTCAGCTAAGGAAAACAT
____________________________________________________________
consensus AGCTGAAGCAACAAATATAGATGTCGTTCAGCTAAGGAAAACAT
. : . : . : . : . : . :
rJMSF052M12+ TAGAAGTCGGGCAAGCTGCAAGAAACAAATTGATCAAGCACAATCTGCGCCTTGTTATGT
____________________________________________________________
consensus TAGAAGTCGGGCAAGCTGCAAGAAACAAATTGATCAAGCACAATCTGCGCCTTGTTATGT
. : . : . : . : . : . :
rJMSF052M12+ TTGTCGTCAACAAATATTTTCAAGACTTTGCTAGTAGTCCGAGGTTCCAAGACCTGTGCC
____________________________________________________________
consensus TTGTCGTCAACAAATATTTTCAAGACTTTGCTAGTAGTCCGAGGTTCCAAGACCTGTGCC
. : . : . : . : . : . :
rJMSF017I17+ TTGAACCCAAAAGGAAGTTCC
rJMFF022B18+ TTGAACCCAAAAGGAAGTTCC
rJMSF052M12+ AAGCAGGCGTGAAGGGCCTTATAACAGCCANTGATCGATTTGAACCCAAAAGGAAGTTCC
____________________________________________________________
consensus AAGCAGGCGTGAAGGGCCTTATAACAGCCANTGATCGATTTGAACCCAAAAGGAAGTTCC
. : . : . : . : . : . :
rJMSF017I17+ GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
rJMFF022B18+ GCNTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
rJMSF052M12+ GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
____________________________________________________________
consensus GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
. : . : . : . : . : . :
rJMSF017I17+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
rJMFF022B18+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
rJMSF052M12+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
____________________________________________________________
consensus CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
. : . : . : . : . : . :
rJMSF017I17+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
rJMFF022B18+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
rJMSF052M12+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
____________________________________________________________
consensus AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
. : . : . : . : . : . :
rJMSF017I17+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
rJMFF022B18+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
rJMSF052M12+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
____________________________________________________________
consensus TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
. : . : . : . : . : . :
rJMSF017I17+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
rJMFF022B18+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
rJMSF052M12+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
____________________________________________________________
consensus TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
. : . : . : . : . : . :
rJMSF017I17+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMFF022B18+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMSF052M12+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMFF048D13+ ATGATGTGC
____________________________________________________________
consensus ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
. : . : . : . : . : . :
rJMSF017I17+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMFF022B18+ TTGATTCTCTGAAGCCGAAAGAAAGTC-GGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMSF052M12+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMFF048D13+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
____________________________________________________________
consensus TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
. : . : . : . : . : . :
rJMSF017I17+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMFF022B18+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMSF052M12+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMFF048D13+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
____________________________________________________________
consensus AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
. : . : . : . : . : . :
rJMSF017I17+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMFF022B18+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMSF052M12+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMFF048D13+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
____________________________________________________________
consensus GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
. : . : . : . : . : . :
rJMSF017I17+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
rJMFF022B18+ GCAGATACATTTTCTAA
rJMSF052M12+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
rJMFF048D13+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
____________________________________________________________
consensus GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
. : . : . : . : . : . :
rJMSF017I17+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
rJMSF052M12+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
rJMFF048D13+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
____________________________________________________________
consensus TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
. : . : . : . : . : . :
rJMSF017I17+ ATTCACATTAATTATAGAT
rJMSF052M12+ ATTCACATTAATTATAGAT
rJMFF048D13+ ATTCACATTAATTATAGATTCGCAGTAGATCTAAAACTACAAGAATTTGAATGTTAAAAG
____________________________________________________________
consensus ATTCACATTAATTATAGATTCGCAGTAGATCTAAAACTACAAGAATTTGAATGTTAAAAG