Contig 011200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047L13Sequence648004851 (4)ref|XP_011082787.1|2e-43PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440607011200 (2)ref|XP_006370097.1|4e-32hypothetical protein POPTR_0001s394901g, partial [Populus trichocarpa] gb|ERP666
JMSF017C24Sequence220004851 (4)755011200 (2)gb|EYU29542.1|4e-67hypothetical protein MIMGU_mgv1a0269212mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF017C24+                      GGCTATTTGACAGACAAAGCAGATGTTTACAGCTTTGGAATAGTTGCA
                      ____________________________________________________________
consensus                         GGCTATTTGACAGACAAAGCAGATGTTTACAGCTTTGGAATAGTTGCA
 
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rJMSF017C24+          TTGGAGATTGTAAGCGGGAAAAGCAACACAAATTACAGACCAAAAGACGAGTTTGTGTAC
                      ____________________________________________________________
consensus             TTGGAGATTGTAAGCGGGAAAAGCAACACAAATTACAGACCAAAAGACGAGTTTGTGTAC
 
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rJMSF017C24+          CTTCTTGATTGGGCTTATGTCCTAGAAGAACAGGGAAATCTATTAGAGCTTGTGGATCAG
rJMFF047L13+                                                               GGATCAG
                      ____________________________________________________________
consensus             CTTCTTGATTGGGCTTATGTCCTAGAAGAACAGGGAAATCTATTAGAGCTTGTGGATCAG
 
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rJMSF017C24+          AGCCTGGGTTCCAACTATTCTAAAGAAGAAGCACTGAGGATGCTCAAACTGGCTCTTTTG
rJMFF047L13+          AGCCTGGGTTCCAACTATTCTAAAGAAGAAGCACTGAGGATGCTCAAACTGGCTCTTTTG
                      ____________________________________________________________
consensus             AGCCTGGGTTCCAACTATTCTAAAGAAGAAGCACTGAGGATGCTCAAACTGGCTCTTTTG
 
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rJMSF017C24+          TGTGCCAATCCATCACCAACTCTCAGGCCATCCATGGTCTCTGTGGTGAAGATGCTCAAC
rJMFF047L13+          TGTGCCAATCCATCACCAACTCTCAGGCCATCCATGGTCTCTGTGGTGAAGATGCTCAAC
                      ____________________________________________________________
consensus             TGTGCCAATCCATCACCAACTCTCAGGCCATCCATGGTCTCTGTGGTGAAGATGCTCAAC
 
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rJMSF017C24+          GGCCAAATCCCAGTGCAAGCACCAGCCGTCGGGCCTGGAAAGTCGAATGATGATCTTGCT
rJMFF047L13+          GGCCAAATCCCAGTGCAAGCACCAGCCGTCGGGCCTGGAAAGTCGAATGATGATCTTGCT
                      ____________________________________________________________
consensus             GGCCAAATCCCAGTGCAAGCACCAGCCGTCGGGCCTGGAAAGTCGAATGATGATCTTGCT
 
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rJMSF017C24+          AGGTTTAAAGCCTTCGGGAAACTGTCACATGACAGCCAAACGACGACAAATTCTTCGTCG
rJMFF047L13+          AGGTTTAAAGCCTTCGGGAAACTGTCACATGACAGCCAAACGACGACAAATTTTTCGTCG
                      ____________________________________________________________
consensus             AGGTTTAAAGCCTTCGGGAAACTGTCACATGACAGCCAAACGACGACAAATTTTTCGTCG
 
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rJMSF017C24+          ACCTTCTCCCTGGATCAGAGCCAGAAAAGTGTTTCAGTTGGTGCACCATGGACAGGTTCC
rJMFF047L13+          ACCTTCTCCCTGGATCAGAGCCAGAAAAGTGTTTCAGTTGGTGCACCATGGACAGGTTCC
                      ____________________________________________________________
consensus             ACCTTCTCCCTGGATCAGAGCCAGAAAAGTGTTTCAGTTGGTGCACCATGGACAGGTTCC
 
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rJMSF017C24+          TCACAATCTCTTCCTATAGATAGTTCTTCCACTTCCAAACTTCTTCCTGATCTTTATGAC
rJMFF047L13+          TCACAATCTCTTCCTATAGATAGTTCTTCCACTTCCAAACTTCTTCCTGATCTTTATGAC
                      ____________________________________________________________
consensus             TCACAATCTCTTCCTATAGATAGTTCTTCCACTTCCAAACTTCTTCCTGATCTTTATGAC
 
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rJMSF017C24+          GTTAACCTTGAATAACTGAGAGGGCGAAACTAGAATATGGCATGCAGTAATTATACTTTG
rJMFF047L13+          GTTAACCTTGAATAACTGAGAGGGCGAAACTAGAATATGGCATGCAGTAATTATACTTTG
                      ____________________________________________________________
consensus             GTTAACCTTGAATAACTGAGAGGGCGAAACTAGAATATGGCATGCAGTAATTATACTTTG
 
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rJMSF017C24+          TTTGGTGTTAAACTAGAATAAGGCAGTCATTATATTTGTTTGATGTCTCCTGGCCTTTAC
rJMFF047L13+          TTTGGTGTTAAACTAGAATAAGGCAGTCATTATATTTGTTTGATGTCTCCTGGCCTTTAC
                      ____________________________________________________________
consensus             TTTGGTGTTAAACTAGAATAAGGCAGTCATTATATTTGTTTGATGTCTCCTGGCCTTTAC
 
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rJMSF017C24+          CAAATTATTTTTGCCTCAATTAGAAAAGCTATGTATCTATTTTTAAGTAATGTGTATATG
rJMFF047L13+          CAAATTATTTTTGCCTCAATTAGAAAAGCTATGTATCTATTTTTAAGTAATGTGTATATG
                      ____________________________________________________________
consensus             CAAATTATTTTTGCCTCAATTAGAAAAGCTATGTATCTATTTTTAAGTAATGTGTATATG
 
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rJMSF017C24+          TATATTGATTCCATTTGTACAAAAATATGAGAAAAGAAGGGTGATGT             
rJMFF047L13+          TATATTGATTCCATTTGTACAAAAATATGAGAAAAGAAGGGTGATGTGTTTTATGATTGG
                      ____________________________________________________________
consensus             TATATTGATTCCATTTGTACAAAAATATGAGAAAAGAAGGGTGATGTGTTTTATGATTGG