Contig 011199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007M23Sequence497001694 (5)435011199 (5)ref|XP_006342335.1|2e-28PREDICTED: probable protein phosphatase 2C 6-like isoform X5 [Solanum tuberosum
JMFF022A11Sequence310001694 (5)753011199 (5)ref|XP_010324035.1|3e-106PREDICTED: probable protein phosphatase 2C 6 isoform X6 [Solanum lycopersicum]
JMFF026H07Sequence310001694 (5)736011199 (5)ref|XP_010324035.1|2e-64PREDICTED: probable protein phosphatase 2C 6 isoform X6 [Solanum lycopersicum]
JMFF038K14Sequence724011199 (5)ref|XP_010324035.1|5e-103PREDICTED: probable protein phosphatase 2C 6 isoform X6 [Solanum lycopersicum]
JMFF047K15Sequence573001694 (5)496011199 (5)ref|XP_010324033.1|5e-11PREDICTED: probable protein phosphatase 2C 50 isoform X5 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF022A11+                                                                  CACC
                      ____________________________________________________________
consensus                                                                     CACC
 
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rJMFF038K14+                         TACCGCTGTGGTTGCCATTCTTTGTCCCACTAATATAATTGTAGC
rJMFF022A11+          AGAAGCAGTTGGATCTACCGCTGTGGTTGCCATTCTTTGTCCCACTAATATAATNGTAGC
                      ____________________________________________________________
consensus             AGAAGCAGTTGGATCTACCGCTGTGGTTGCCATTCTTTGTCCCACTAATATAATTGTAGC
 
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rJMFF038K14+          AAATTGTGGCGATTCTAGGGCAGTCCTGTGCCGGGGAAAATTACCCATGCCATTGTCAGT
rJMFF022A11+          AAATTGTGGCGATTCTAGGGCAGTCCTGTGCCGGGGAAAATTACCCATGCCATTGTCAGT
                      ____________________________________________________________
consensus             AAATTGTGGCGATTCTAGGGCAGTCCTGTGCCGGGGAAAATTACCCATGCCATTGTCAGT
 
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rJMFF038K14+          CGATCACAAACCAAATAGAGAAGATGAGTACTCGAGAATCGAAGCTTTGGGAGGCAAGGT
rJMFF022A11+          CGATCACAAACCAAATAGAGAAGATGAGTACTCGAGAATCGAAGCTTTGGGAGGCAAGGT
rJMFF026H07+                         TAGAGAAGATGAGTACTCGAGAATCGAAGCTTTGGGAGGCAAGGT
                      ____________________________________________________________
consensus             CGATCACAAACCAAATAGAGAAGATGAGTACTCGAGAATCGAAGCTTTGGGAGGCAAGGT
 
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rJMFF038K14+          CATTAATTGGGATGGGCACCGCGTTTCTGGTGTGCTTGCAGTTTCAAGATCCATTGGTGA
rJMFF022A11+          CATTAATTGGGATGGGCACCGCGTTTCTGGTGTGCTTGCAGTTTCAAGATCCATTGGTGA
rJMFF026H07+          CATTAATTGGGATGGGCNCCGCGTTTCTGGTGTGCTTGCAGTTTCAAGATCCATTGGTGA
                      ____________________________________________________________
consensus             CATTAATTGGGATGGGCACCGCGTTTCTGGTGTGCTTGCAGTTTCAAGATCCATTGGTGA
 
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rJMFF038K14+          TAGATATCTGAGGCCATATGTGATACCAGTACCGGAGATAATGTTTGTCCCACGGGCAAA
rJMFF022A11+          TAGATATCTGAGGCCATATGTGATACCAGTACCGGAGATAATGTTTGTCCCACGGGCAAA
rJMFF007M23+                                              GATAATNTTTGTCCCCCGGGCAAA
rJMFF026H07+          TAGATATCTGAGGCCATATGTGATACCAGTACCGGAGATAATGTTTGTCCCACGGGCAAA
                      ____________________________________________________________
consensus             TAGATATCTGAGGCCATATGTGATACCAGTACCGGAGATAATGTTTGTCCCACGGGCAAA
 
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rJMFF038K14+          AGAAGACGAGTGCCTTGTTTTAGCGAGCGATGGTCTATGGGATGTGATGACTAACGAGGA
rJMFF022A11+          AGAAGACGAGTGCCTTGTTTTAGCGAGCGATGGTCTATGGGATGTGATGACTAACGAGGA
rJMFF007M23+          AGAAGACGAGTGCCTTGTTTTAGNGAGCGATGGTTTNTGGGATGTGATGACTAACGAGGA
rJMFF026H07+          AGAAGACGAGTGCCTTGTTTTAGCGAGCGATGGTCTATGGGATGTGATGACTAACGAGGA
                      ____________________________________________________________
consensus             AGAAGACGAGTGCCTTGTTTTAGCGAGCGATGGTCTATGGGATGTGATGACTAACGAGGA
 
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rJMFF038K14+          GGTGTGTGATGTGGCAAGGCGACGGCTTCTGCTCTGGCACAAGAAGAATGGCGGTACTAT
rJMFF022A11+          GGTGTGTGATGTGGCAAGGCGACGGCTTCTGCTCTGGCACAAGAAGAATGGCGGTACTAT
rJMFF007M23+          GGTGTGTGATGTGGCAAGGCGACGGCTTTTGCTTTGGCNCAAGAAGAATGGCGGTNCTAT
rJMFF026H07+          GGTGTGTGATGTGGCAAGGCGACGGCTTNTGCTNTGGCACAAGAAGAATGGCGGTACTAT
                      ____________________________________________________________
consensus             GGTGTGTGATGTGGCAAGGCGACGGCTTCTGCTCTGGCACAAGAAGAATGGCGGTACTAT
 
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rJMFF038K14+          GCTGTCTAGAGAAAGAAGCGACGACCCTGACCCAGCCGCCCAAGATGCAGCAGAGTACCT
rJMFF022A11+          GCTGTCTAGAGAAAGAAGCGACGACCCTGACCCAGCCGCCCAAGATGCAGCAGAGTACCT
rJMFF007M23+          GCTGTTTNGAGAAAGAAGNGACGNCCCTGACCCNNCCGCCCNAGATGCAGCAGAGTNCCT
rJMFF026H07+          GCTGTNTAGAGAAAGAAGCGACGACCCTGACCCAGCCGCCCAAGATGCAGCAGAGTACCT
rJMFF047K15+                                                      ATGCAGCAGAGTACCT
                      ____________________________________________________________
consensus             GCTGTCTAGAGAAAGAAGCGACGACCCTGACCCAGCCGCCCAAGATGCAGCAGAGTACCT
 
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rJMFF038K14+          CACCCGAATCGCCCTCCAAAGGGGAAGCAGAGATAACATCTCGGTTATTGTGGTGGATCT
rJMFF022A11+          CACCCGAATCGCCCTCCAAAGGGGAAGCAGAGATAACATCTCGATTATTGTGGTGGATCT
rJMFF007M23+          CNCCCGAATNGCCCTCCAAAGGGGAAGCNGAGATAACATNTCGGNTNTTGTGGNGGATTT
rJMFF026H07+          CACCCGAATCGCCCTCCAAAGGGGAAGCAGAGATAACATCTCGGTTATTGTGGTGGATNT
rJMFF047K15+          CACCCGAATCGCCCTCCAAAGGGGAAGCAGAGATAACATCTCGGTTATTGTGGTGGATCT
                      ____________________________________________________________
consensus             CACCCGAATCGCCCTCCAAAGGGGAAGCAGAGATAACATCTCGGTTATTGTGGTGGATCT
 
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rJMFF038K14+          AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGTGTTGTTACTAAATAATAATCTTAAA
rJMFF022A11+          AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGTGTTGTTACTAAATAATAATCTTAAA
rJMFF007M23+          AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGNGTTGNTNCTAAATAATAATTTTAAA
rJMFF026H07+          AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGTGTTGTTACTAAATAATAATCTTAAA
rJMFF047K15+          AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGTGTTGTTACTAAATAATAATCTTAAA
                      ____________________________________________________________
consensus             AAAGGCTCAAAGGAAGTTCAAGAAGAAAGCATAGTGTTGTTACTAAATAATAATCTTAAA
 
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rJMFF038K14+          CTCGGTTCCCAACTTCCCACGTCGTTAATCTAGCAGAACCTAGCTTCGGTTTGAGTTTCT
rJMFF022A11+          CTCGGTTCCCAACTTCCCACGTCGTTAATCTAGCAGAACCTAGCTTCGGTTTGAGTTTCT
rJMFF007M23+          CTCGGTTCCCAACTTCCCNCGTNGNTAATTTAGCAGAACCTAGNTTCGGTTTGAGTTTNT
rJMFF026H07+          CTCGGTTCCCAACTTCCCACGTCGTTAATNTAGCAGAACCTAGCTTCGGTTTGAGTTTCT
rJMFF047K15+          CTCGGTTCCCAACTTCCCACGTCGTTAATCTAGCAGAACCTAGCTTCGGTTTGAGTTTCT
                      ____________________________________________________________
consensus             CTCGGTTCCCAACTTCCCACGTCGTTAATCTAGCAGAACCTAGCTTCGGTTTGAGTTTCT
 
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rJMFF038K14+          TGCTGGCTAGGTTAGTGCAGCAGTCTTATGCTCTTCTTCTTCTTCTTCTTCT        
rJMFF022A11+          TGCTGGCTAGGTTAGTGCAGCAGTCTTATGC---TCTTCTTCTTCTTCTTCTTCTGTTAT
rJMFF007M23+          TGCTGGNTAGGNTAGNGCAGCAGTNTTATG                              
rJMFF026H07+          TGCTGGCTAGGTTAGTGCAGCAGTCTTATGC---TCTTCTTCTTCTTCTTCTTCTGTTAT
rJMFF047K15+          TGCTGGCTAGGTTAGTGCAGCAGTCTTATGCTCTTCTTCTTCTTCTTCTTCTTCTGTTAT
                      ____________________________________________________________
consensus             TGCTGGCTAGGTTAGTGCAGCAGTCTTATGCTCTTCTTCTTCTTCTTCTTCTTCTGTTAT
 
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rJMFF022A11+          GGCACATTACAGTAAATACAGTATCCTAACAA                            
rJMFF026H07+          GGCACATTACAGTAAATACAGTATCCTAACAAATATATTNTGAGCTTTGATCTCTAGCAG
rJMFF047K15+          GGCACATTACAGTAAATACAGTATCCTAACAAATATATTCTGAGCTTTGATCTCTAGCAG
                      ____________________________________________________________
consensus             GGCACATTACAGTAAATACAGTATCCTAACAAATATATTCTGAGCTTTGATCTCTAGCAG
 
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rJMFF026H07+          TCTGACTGGGCAGTGAAAGAACCACTTTACGAGTTTTACTACGTGTACTCCCAATTCTTA
rJMFF047K15+          TCTGACTGGGCAGTGAAAGAACCACTTTACGAGTTTTACTACGTGTACTCCCAATTCTTA
                      ____________________________________________________________
consensus             TCTGACTGGGCAGTGAAAGAACCACTTTACGAGTTTTACTACGTGTACTCCCAATTCTTA
 
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rJMFF026H07+          CTCTCTCGCTTTTATTTCATGATGTGACAGACAC                          
rJMFF047K15+          CTCTCTCGCTTTTATTTCATGATGTGACAGACACTGATAAACTTTTTTTTTTCCATGTGG
                      ____________________________________________________________
consensus             CTCTCTCGCTTTTATTTCATGATGTGACAGACACTGATAAACTTTTTTTTTTCCATGTGG
 
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rJMFF047K15+          GCCCTAGTACAAGTGCGTCTTTTACAACATCACTTCTATAACAAATTCTTGTGTTCCAAG
                      ____________________________________________________________
consensus             GCCCTAGTACAAGTGCGTCTTTTACAACATCACTTCTATAACAAATTCTTGTGTTCCAAG