Contig 011197:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF033B12-                                         GAGAACAGCATCATTTTAGCCTCTTTCCTA
                      ____________________________________________________________
consensus                                           GAGAACAGCATCATTTTAGCCTCTTTCCTA
 
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JMSF033B12-           AGTGCTTCGTAGCCAACTGCTGAGCCGCCTCAGAAATGGGAATCGTGAGACCAGACGAGA
                      ____________________________________________________________
consensus             AGTGCTTCGTAGCCAACTGCTGAGCCGCCTCAGAAATGGGAATCGTGAGACCAGACGAGA
 
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JMSF033B12-           GCCGGAGGATGGAGATCGAGGAGCTCCGGCGAATGCTGCTATCTTACGCTGGTGTGTACC
                      ____________________________________________________________
consensus             GCCGGAGGATGGAGATCGAGGAGCTCCGGCGAATGCTGCTATCTTACGCTGGTGTGTACC
 
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JMSF033B12-           GGAGGAAGGATGAAGAAGCGTTCAGATTGTCCGGACCGGATGCCTCTTGAGCAAGACGAC
                      ____________________________________________________________
consensus             GGAGGAAGGATGAAGAAGCGTTCAGATTGTCCGGACCGGATGCCTCTTGAGCAAGACGAC
 
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JMSF033B12-           AAACTGGTGTGCGTTATCGGAGGCGTTCCCTACCTCGGGATCGCTATTGTGAACCAGCTC
                      ____________________________________________________________
consensus             AAACTGGTGTGCGTTATCGGAGGCGTTCCCTACCTCGGGATCGCTATTGTGAACCAGCTC
 
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JMSF033B12-           CTGCTCCGAGGCTACTCCGTCCGGATCCTCGTCGACAACGAAGAGGATCTGGACAAGCTG
                      ____________________________________________________________
consensus             CTGCTCCGAGGCTACTCCGTCCGGATCCTCGTCGACAACGAAGAGGATCTGGACAAGCTG
 
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JMSF033B12-           AGGGAGATGGAAAATTCTGGTGAAATGAGAGGCCCAAACAACAGCAACGTGGTGGAGGGA
                      ____________________________________________________________
consensus             AGGGAGATGGAAAATTCTGGTGAAATGAGAGGCCCAAACAACAGCAACGTGGTGGAGGGA
 
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JMSF033B12-           GTAATGGCAAGGCTAACTGAAGTTGAAGATTTATCAGAGGCCTTCAATGGTTGTCGTGGC
                      ____________________________________________________________
consensus             GTAATGGCAAGGCTAACTGAAGTTGAAGATTTATCAGAGGCCTTCAATGGTTGTCGTGGC
 
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JMSF033B12-           GTATTCCAAACTGCTGCCTTTATTGATCCGGCTGGGCTATCTGGTTATTCTAAATCCATG
JMFF047I03-                                                              AAATCCATG
rJMSF033B12+                                                             AAATCCATG
rJMFF018P10+                                                             AAATCCATG
                      ____________________________________________________________
consensus             GTATTCCAAACTGCTGCCTTTATTGATCCGGCTGGGCTATCTGGTTATTCTAAATCCATG
 
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JMSF033B12-           GCTGAAGTTGAAGTGATGGCTAGCAAGAACGTTCTAGAGGCATGTGCAAGTACATCATCG
JMFF047I03-           GCTGAAGTTGAAGTGATGGCTAGCAAGAACGTTCTAGAGGCATGTGCAAGTACATCATCG
rJMSF033B12+          GCTGAAGTTGAAGTGATGGCTAGCAAGAACGTTCTAGAGGCATGTGCAAGTACATCATCG
rJMFF018P10+          GCTGAAGTTGAAGTGATGGCTAGCAAGAACGTTCTAGAGGCATGTGCAAGTACATCATCG
                      ____________________________________________________________
consensus             GCTGAAGTTGAAGTGATGGCTAGCAAGAACGTTCTAGAGGCATGTGCAAGTACATCATCG
 
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JMSF033B12-           GTTAGATACTGTGTGCTTACATCCTCACTCCTAACATGCATATGGCAAGACCACTGTCTC
JMFF047I03-           GTTAGATACTGTGTGCTTACATCCTCACTTCTAACATGCATATGGCAAGACCACTGTCTC
rJMSF033B12+          GTTAGATACTGTGTGCTTACATCCTCACTCCTAACATGCATATGGCAAGACCACTGTCTC
rJMFF018P10+          GTTAGATACTGTGTGCTTACATCCTCACTTCTAACATGCATATGGCAAGACCACTGTCTC
                      ____________________________________________________________
consensus             GTTAGATACTGTGTGCTTACATCCTCACTTCTAACATGCATATGGCAAGACCACTGTCTC
 
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JMSF033B12-           AACAACACATCTCGCAGAATTGACCATGAA                              
JMFF047I03-           AACAACACATCTCGCAGAATTGACCATGAAAGCTGGAGCAATGACTCTATCTGCACAACT
rJMSF033B12+          AACAACACATCTCGCAGAATTGACCATGAAAGCTGGAGCAATGACTCTATCTGCACAACT
rJMFF018P10+          AACAACACATCTCGCAGAATTGACCATGAAAGCTGGAGCAATGACTCTATCTGCACAACT
                      ____________________________________________________________
consensus             AACAACACATCTCGCAGAATTGACCATGAAAGCTGGAGCAATGACTCTATCTGCACAACT
 
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JMFF047I03-           AAAAAGCTTTGGTATGCCTTGGGGAAACTGAGGGCAGAAAGGGCTGCGTGGGAAATAGCC
rJMSF033B12+          AAAAAGCTTTGGTATGCCTTGGGGAAACTGAGGGCAGAAAGGGCTGCGTGGGAAATAGCC
rJMFF018P10+          AAAAAGCTTTGGTATGCCTTGGGGAAACTGAGGGCAGAAAGGGCTGCGTGGGAAATAGCC
                      ____________________________________________________________
consensus             AAAAAGCTTTGGTATGCCTTGGGGAAACTGAGGGCAGAAAGGGCTGCGTGGGAAATAGCC
 
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JMFF047I03-           AAGGAGACTGGATTGAAGCTGGCAACTATTTGCCCAGNGCTCATCACGGGTCCTGAATTT
rJMSF033B12+          AAGGAGACTGGATTGAAGCTGGCAACTATTTGCCCAGGGCTCATCACGGGTCCTGAATTT
rJMFF018P10+          AAGGAGACTGGATTGAAGCTGGCAACTATTTGCCCAGGGCTCATCACGGGTCCTGAATTT
                      ____________________________________________________________
consensus             AAGGAGACTGGATTGAAGCTGGCAACTATTTGCCCAGGGCTCATCACGGGTCCTGAATTT
 
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JMFF047I03-           CGTAACAGGAATCCAACTCCTACNATTGCTTATCTCNAAGGAGCTC              
rJMSF033B12+          CGTAACAGGAATCCAACTCCTACAATTGCTTATCTCAAAGGAGCTCGGGAAATGTACAGA
rJMFF018P10+          CGTAACAGGAATCCAACTCCTACAATTGCTTATCTCAAAGGAGCTCGGGAAATGTACAGA
                      ____________________________________________________________
consensus             CGTAACAGGAATCCAACTCCTACAATTGCTTATCTCAAAGGAGCTCGGGAAATGTACAGA
 
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rJMSF033B12+          AAGGGACTACTCGCAACTGTAGATGTAAACGCCTTAGCGAAGGCGCATGTAACAGTGTAC
rJMFF018P10+          AAGGGACTACTCGCAACTGTAGATGTAAACGCCTTAGCGAAGGCGCATGTAACAGTGTAC
rJMFF047I03+                  ACTCGCAACTGTAGATGTAAACGCCTTAGCGAAGGCGCATGTAACAGTGTAC
                      ____________________________________________________________
consensus             AAGGGACTACTCGCAACTGTAGATGTAAACGCCTTAGCGAAGGCGCATGTAACAGTGTAC
 
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rJMSF033B12+          GAGGAGATGAAGAACACGGCACACGGGAGATATGTTTGCTTCAACAAAGTTCTAACCACC
rJMFF018P10+          GAGGAGATGAAGAACACAGCACACGGGAGATATGTTTGCTTCAACAAAGTTCTAACCACC
rJMFF047I03+          GAGGAGATGAAGAACACAGCACACGGGAGATATGTTTGCTTCAACAAAGTTCTAACCACC
                      ____________________________________________________________
consensus             GAGGAGATGAAGAACACAGCACACGGGAGATATGTTTGCTTCAACAAAGTTCTAACCACC
 
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rJMSF033B12+          CCAGAAGAAGTTGAAAACCTGGCAAGAGAAACAGGAATTGATATTGGCACCATTATAGAC
rJMFF018P10+          CCAGAAGAAGTTGAAAACCTGGCAAGAGAAACAGGAATTGATATTGGCACCATTATAGAC
rJMFF047I03+          CCAGAAGAAGTTGAAAACCTGGCAAGAGAAACAGGAATTGATATTGGCACCATTATAGAC
                      ____________________________________________________________
consensus             CCAGAAGAAGTTGAAAACCTGGCAAGAGAAACAGGAATTGATATTGGCACCATTATAGAC
 
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rJMSF033B12+          GACGATGATGCATTAAACGACCCAGATAGTAGTAAAGACAGGATACAACTATCAGATTTA
rJMFF018P10+          GACGATGATGCATTAAACGACCCAGATAGTAGTAAAGACAGGATCCAACTATCAGATTTA
rJMFF047I03+          GACGATGATGCATTAAACGACCCAGATAGTAGTAAAGACAGGATCCAACTATCAGATTTA
                      ____________________________________________________________
consensus             GACGATGATGCATTAAACGACCCAGATAGTAGTAAAGACAGGATCCAACTATCAGATTTA
 
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rJMSF033B12+          AAGCTAAATCGCCTAATGTCACGAACCTTTAGATGTCT                      
rJMFF018P10+          AAGCTAAATCGCCTAATGTCACGAACCTTTAGATGTCTTGACTACTTAAACTAAATTATT
rJMFF047I03+          AAGCTAAATCGCCTAATGTCACGAACCTTTAGATGTCTTGACTACTTAAACTAAATTATT
                      ____________________________________________________________
consensus             AAGCTAAATCGCCTAATGTCACGAACCTTTAGATGTCTTGACTACTTAAACTAAATTATT
 
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rJMFF018P10+          GATCGCACTCAAGATGAATTTTGGCATTCAATATTCGTTGTTATAAATAATATTT     
rJMFF047I03+          GATCGCACTCAAGATGAATTTTGGCATTCAATATTCGTTGTTATAAATAATATTTTCAAT
                      ____________________________________________________________
consensus             GATCGCACTCAAGATGAATTTTGGCATTCAATATTCGTTGTTATAAATAATATTTTCAAT
 
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rJMFF047I03+          AAAATAATTTTATATTTTACAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAAATAATTTTATATTTTACAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG