Contig 011196:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030M19Sequence447006033 (4)gb|KDO70549.1|6e-37hypothetical protein CISIN_1g039003mg [Citrus sinensis]495011196 (2)ref|XP_004230267.1|6e-12PREDICTED: F-box protein PP2-B15-like [Solanum lycopersicum]
JMFF047F22Sequence625006033 (4)ref|XP_006344703.1|6e-72PREDICTED: F-box protein PP2-B15-like [Solanum tuberosum]513011196 (2)ref|XP_009596287.1|3e-07PREDICTED: F-box protein PP2-B13-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF030M19+                                       ATGAACATNTCGGACGGCNCCTTTGGGCTTG
rJMFF047F22+                                     TGATGAACATATCGGACGGCGCCTTTGGGCTTG
                      ____________________________________________________________
consensus                                        TGATGAACATATCGGACGGCGCCTTTGGGCTTG
 
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rJMFF030M19+          ATTNGAGGCCGTGCGAGANGTCAGTCAAAGTGGGTGATNGAGGAGCCNCCNCCNCCGGCA
rJMFF047F22+          ATTCGAGGCCGTGCGAGATGTCAGTCAAAGTGGGTGATCGAGGAGCCGCCGCCGCCGGCA
                      ____________________________________________________________
consensus             ATTCGAGGCCGTGCGAGATGTCAGTCAAAGTGGGTGATCGAGGAGCCGCCGCCGCCGGCA
 
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rJMFF030M19+          TTGNGTATTTGCAGGCCCCCGGCGGTGCGGAANAGCGGCGGCCTTATAGGAACCGCGTTG
rJMFF047F22+          TTGCGTATTTGCAGGCCGCCGGCGGTGCGGAAGAGCGGCGGCCTTATAGGAACCGCGTTG
                      ____________________________________________________________
consensus             TTGCGTATTTGCAGGCCGCCGGCGGTGCGGAAGAGCGGCGGCCTTATAGGAACCGCGTTG
 
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rJMFF030M19+          GCGTTGAAATGGNGAANCCNCAAGGGATTGAAGGCGGCGAGAGACGAGATTCNCGGCGGA
rJMFF047F22+          GCGTTGAAATGGCGAAGCCGCAAGGGATTGAAGGCGGCGAGAGACGAGATTCACGGCGGA
                      ____________________________________________________________
consensus             GCGTTGAAATGGCGAAGCCGCAAGGGATTGAAGGCGGCGAGAGACGAGATTCACGGCGGA
 
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rJMFF030M19+          GGAGCGATGGGTGGATGGAGGTTGAGCTNGGAGANTTTTTCAACGGCGGAGAAGACGGCG
rJMFF047F22+          GGAGCGATGGGTGGATGGAGGTTGAGCTCGGAGAGTTCTTCAACGGCGGAGAAGACGGCG
                      ____________________________________________________________
consensus             GGAGCGATGGGTGGATGGAGGTTGAGCTCGGAGAGTTTTTCAACGGCGGAGAAGACGGCG
 
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rJMFF030M19+          GCGATGAGGAGATTNCGATGAGTTTGTCGGAGGTCAAAGGTTGTCACGTTAAAGGNGGAC
rJMFF047F22+          GCGATGAGGAGATTACGATGAGTTTGTCGGAGGTCAAAGGTTGTCACGTTAAAGGCGGAC
                      ____________________________________________________________
consensus             GCGATGAGGAGATTACGATGAGTTTGTCGGAGGTCAAAGGTTGTCACGTTAAAGGCGGAC
 
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rJMFF030M19+          TTATNGTACAAGGCATTGAAATTAGACCTAAATTCCGATCATAATTTTAATCTTTTTTTT
rJMFF047F22+          TTATCGTACAAGGCATTGAAATTAGACCTAAATTCCGATCATAATTTTAATCTTTTTTTT
                      ____________________________________________________________
consensus             TTATCGTACAAGGCATTGAAATTAGACCTAAATTCCGATCATAATTTTAATCTTTTTTTT
 
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rJMFF030M19+          TTTTAATTATCATAAACTGTAATTTTTAATTAGTCACGAAAATGATTGTTTTCATTCTTT
rJMFF047F22+          TTTTAATTATCATAAACTGTAATTTTTAATTAGTCACGAAAATGATTGTTTTCATTCTTT
                      ____________________________________________________________
consensus             TTTTAATTATCATAAACTGTAATTTTTAATTAGTCACGAAAATGATTGTTTTCATTCTTT
 
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rJMFF030M19+          GAAGGATCAAAATAGAAAGGACTAAAACAATCACAAATAAAAGT                
rJMFF047F22+          GAAGGATCAAAATAGAAAGGACTAAAACAATCACAAATAAAAGTTACACTTTTAATTACT
                      ____________________________________________________________
consensus             GAAGGATCAAAATAGAAAGGACTAAAACAATCACAAATAAAAGTTACACTTTTAATTACT